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TranscriptomicsRNA-Seq analysis of KLF3 knockout E14.5 TER119+ (erythroid) murine fetal liver cells
The aim of this study was to analyze the transcriptome of TER119+ fetal liver cells in the absence of the transcription factor KLF3 at murine embryonic day E14.5 Three wildtype (WT; Klf3+/+) and three knockout (KO; Klf3-/-) samples
ORGANISM(S): Mus musculus 
2014-02-23 | E-GEOD-50554 | biostudies-arrayexpress
GenomicsA CpG mutational hotspot in a ONECUT (HNF6) binding site accounts for the prevalent variant of Hemophilia B Leyden
Hemophilia B, or the 'Royal Disease', arises from mutations in the Coagulation Factor IX (F9) gene. Mutations within the F9 promoter are associated with a remarkable form of the disease, termed Hemophilia B Leyden, in which symptoms ameliorate after puberty. Mutations at the -5/-6 site account for t...
ORGANISM(S): Mus musculus 
2013-03-06 | E-MTAB-890 | biostudies-arrayexpress
GenomicsGenome-wide binding profiles of an artificial zinc finger protein with or without a KLF3 functional domain
Transcription factors are often regarded as having two distinct components: a DNA binding domain (DBD) to allow binding to the regulatory region of a target gene and a trans-acting functional domain (FD) to modulate gene expression. Recently, it is becoming clear that the DBDs of transcription facto...
ORGANISM(S): Homo sapiens 
2016-01-05 | E-GEOD-69739 | biostudies-arrayexpress
TranscriptomicsMicroarray analysis of wildtype, Klf3 H275R homozygous and heterozygous, Klf3 CH gene trap homozygous and heterozygous E12.5 embryos
The aim of this experiment was to investigate the dysregulation of gene expression in whole E12.5 embryos containing a gene trap (CH) or point mutation (H275R) within the Klf3 gene Affymetrix microarrays were performed on RNA from wildtype, Klf3 H275R/H275R, Klf3 H275R/+, Klf3 CH homozygous and Klf3...
ORGANISM(S): Mus musculus 
2013-01-31 | E-GEOD-43908 | biostudies-arrayexpress
GenomicsGenome-wide binding profiles of KLF3 and KLF3 mutants in MEF cells
Transcription factors are often regarded as being comprised of a DNA-binding domain and a functional domain. The two domains are considered separable and autonomous, with the DNA-binding domain directing the factor to its target genes and the functional domain imparting transcriptional regulation. W...
ORGANISM(S): Mus musculus 
2013-10-17 | E-GEOD-44748 | biostudies-arrayexpress
TranscriptomicsKrüppel-like factor 3 KO and rescue expression data in murine embyronic fibroblasts
Krüppel-like factor 3 (KLF3) is a transcriptional repressor that has roles in adipogenesis, B-cell maturation and erythropoiesis (for review see Pearson et al., 2012). We profiled gene expression in murine embryonic fibroblasts (MEFs) where Klf3 had been knocked-out and where the same cell had been ...
ORGANISM(S): Mus musculus 
2013-10-17 | E-GEOD-44744 | biostudies-arrayexpress
TranscriptomicsMicroarray analysis of monoclonal K562 lines transfected with pEF1a or pEF1a-Pu.2
Ectopic expression of the novel Pu.1 isoform Pu.2 in K562 was performed to investigate the biological function and importance of this novel protein Affymetrix microarrays were performed on RNA from K562 cells transfected with pEF1a or pEF1a-Pu.2 Three monoclonal lines derived from K562 expressing pE...
ORGANISM(S): Homo sapiens 
2013-08-23 | E-GEOD-50083 | biostudies-arrayexpress
GenomicsCombinatorial transcription factor binding evolution in five placental mammals
Zoo-ChIP: Functional analysis of experimentally determined combinatorial transcription factor binding in multiple mammalian species
ORGANISM(S): Rattus norvegicus 
2014-09-27 | E-MTAB-1509 | biostudies-arrayexpress
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