Culturing - OmicsDI

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Mass Spectrometry (234)
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Instrument Platform

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CHEBI ID

CHEBI:16335 (12)
CHEBI:30769 (12)
CHEBI:6650 (10)
CHEBI:16235 (10)
CHEBI:15428 (10)
CHEBI:30915 (9)
CHEBI:15741 (9)
CHEBI:17203 (9)
CHEBI:17596 (9)
CHEBI:17351 (9)
CHEBI:15756 (9)
CHEBI:27266 (8)
CHEBI:22660 (8)
CHEBI:32816 (8)
CHEBI:17750 (8)
CHEBI:17115 (8)
CHEBI:16414 (8)
CHEBI:28842 (8)
CHEBI:17754 (7)
CHEBI:78320 (7)
CHEBI:18186 (7)
CHEBI:17822 (7)
CHEBI:18012 (7)
CHEBI:28044 (7)
CHEBI:17154 (7)
CHEBI:16708 (7)
CHEBI:17568 (7)
CHEBI:55474 (1)
CHEBI:56080 (1)
CHEBI:61448 (1)

Metabolite Name

Guanine (8)
Adenine (7)
L-proline (6)
Adenosine (6)
Phenylalanine (6)
Thymine (6)
Choline (6)
Adenosine (6)
L-Phenylalanine (6)
L-valine (5)
Uridine (5)
Inosine (5)
Guanosine (5)
Malate (5)
Fumarate (5)
Pyruvate (5)
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Valine (5)
Proline (5)
Glutamine (5)
Glycine (5)
Pyroglutamic acid (5)
Betaine (5)
Uracil (5)
Glycine (5)
Arachidonic acid (5)
Creatinine (5)
L-Valine (5)
L-Glutamine (5)
Cytidine (5)

First Public Date

2024 (222)
2025 (220)
2014 (207)
2023 (130)
2021 (124)
2022 (120)
2026 (109)
2019 (89)
2018 (87)
2020 (78)
2017 (46)
2016 (41)
2015 (38)
2013 (26)
2012 (1)

Modelling Approach

Ordinary differential equation model (2)
Constraint-based model (1)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (12)
Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, SE-751 23 Uppsala, Sweden. (4)
Cellular Proteomics, Helmholtz Centre for Infection Research, Braunschweig, Germany (4)
Principal Investigator Centre for Targeted Protein Degradation, School of Life Sciences (4)
Faculty of Medicine, University of Ottawa, Canada (3)
Division of Cell Signalling and Immunology, University of Dundee, Dundee, UK. (2)
School of Pharmaceutical Sciences, Faculty of Medicine, University of Ottawa (2)
University of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (2)
Principal Investigator • Centre for Targeted Protein Degradation (2)
DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany (2)
NICM Health Research Institute, Western Sydney University (2)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Head of System Biology Lab. at Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency (2)
BMI, Faculty of Medicine, University of Ottawa (2)
BMI, Faculty of Medicine, University of Ottawa, Canada (2)
Head of Proteomics (2)
School of Life Sciences, Peking University, Beijing 100871, P.R. China (1)
The Gene Lay Institute of Immunology and Inflammation Harvard Medical School and Brigham and Women's Hospital (1)
Institute of parasitology Vetsuisse University of Bern (1)
1. CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria 2. Center for Physiology and Pharmacology, Medical University of Vienna, Vienna, Austria (1)
State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi Research Center for Microbial and Enzyme Engineering Technology, College of Life Science and Technology, Guangxi University, Nanning, China (1)
Speaker of the Omics Center Head of Research Unit "Functional Proteomics and Metabolomic Pathways" Medical University Graz ZMF, Stiftingtalstrasse 24 8010 Graz Austria (1)
Institute of Animal Hygiene and Environmental Health, Centre for Infectious Medicine, Free University of Berlin, Robert-von-Ostertag-Str. 7-13, Berlin 14163, Germany. Jayaseelan.murugaiyan@fu-berlin.de, Department of Biotechnology, SRM University AP, Andhra Pradesh, Neerukonda, Mangalagiri, Andhra Pradesh 522 502, India. jayaseelan.m@srmap.edu.in (1)
Genetics and Experimental Bioinformatics, Faculty of Biology, University of Freiburg, Schänzlestr. 1, 79104 Freiburg, Germany (1)
Max Planck Institute for Heart and Lung Research (1)
Department of Obstetrics and Gynecology, Nagoya University, Aichi, Japan (1)
Department of Biochemistry, Microbiology and Immunology, Faculty of Medicine, University of Ottawa, Canada (1)
Department of biochemistry and molecular biology, BioMS section, University of Southern Denmark (1)
University of Bergen, N-5020 Bergen, Norway (1)
Division of Neurobiology, Laboratory of Molecular Biology, Cambridge, UK (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (1)

Submitter Keywords

Immuno-oncology (1)

Classification

bacteria (50)
fungi (12)
protozoa (10)
viruses (6)
helminths (4)

Modification

Not available (2)
4x(2)H labeled dimethylated residue (1)
4x(2)H labeled dimethylated L-lysine (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (484)
RNA-seq of coding RNA (105)
ChIP-seq (36)
RNA-seq of coding RNA from single cells (15)
Other (12)
Methylation profiling by array (9)
Methylation profiling by high throughput sequencing (9)
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Comparative genomic hybridization by array (7)
Unknown experiment type (6)
Cell line - High-throughput sequencing (6)
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RNA-seq of total RNA (4)
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Baseline (1)
Human - Two-color microarray (1)
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Trajectory (1)
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Release Date

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2002 (12)
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2000 (10)
1999 (8)
1998 (5)
2001 (4)
1996 (1)

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Optimized Protocol for Culturing Porcine Retinal Explants and RNA Isolation

PRJNA1416961 | ENA

RNAseq of iPSC derived pulmonary organoids by co-culturing endodermal and mesodermal progenitors

PRJEB56634 | ENA

Diverse but unique astrocytic phenotypes during embryonic stem cell differentiation, culturing and aging

PRJNA784306 | ENA

Epigenome analysis of glioblastoma stem-like-cells after long time culturing [Methylation]

PRJNA751562 | ENA

Culturing of primary mouse hepatocytes is associated with major changes to the proteome and transcriptome

PRJNA1177797 | ENA

RNA sequencing of undifferentiated iPS cells after culturing under graded zinc concentrations

PRJNA638105 | ENA

Dynamics of the physiology, metabolome and proteins during the circadian cycle of Synechocystis sp. PCC 6803 under culturing conditions relevant for mass culturing

Here, we present the results of a study of the model cyanobacterium Synechocystis sp. PCC 6803, cultured in a lab-scale photobioreactor simulating physiological conditions present during large-scale culturing. The culture is flushed with N2 and CO2 without additional O2. This leads to an anoxic envi...

ORGANISM(S): Synechocystis sp. PCC 6803

2016-09-27 | PXD001619 | Pride

Culturing the desert microbiota.

Not available

S-EPMC10126307 | biostudies-literature

Dual-axis Rotating Capillary Containers for 3D Culturing of Spheroids

PRJNA1430233 | ENA

Culturing of Daoy cells in astrocyte conditioned media

PRJNA625003 | ENA

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