Cyanobacterial - OmicsDI

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Unknown (3011)
Genomics (1004)
Proteomics (99)
Transcriptomics (81)
Metabolomics (35)
Other (6)
Models (3)

Organisms

Synechocystis sp. PCC 6803 (34)
Mus musculus (10)
Synechococcus elongatus PCC 7942 = FACHB-805 (10)
Homo sapiens (8)
Cyanobacteriota (5)
Prochlorococcus marinus subsp. pastoris str. CCMP1986 (2)
Daphnia pulex (2)
Escherichia coli (2)
Calothrix rhizosoleniae (2)
Richelia intracellularis (2)
seawater metagenome (2)
Escherichia coli K-12 (2)
Microcystis aeruginosa FACHB-905 = DIANCHI905 (2)
Arabidopsis thaliana (2)
Nostoc sp. PCC 7120 = FACHB-418 (2)
Synechococcus elongatus (1)
Crocosphaera subtropica ATCC 51142 (1)
Geminocystis herdmanii PCC 6308 (1)
Picosynechococcus sp. PCC 7002 (1)
Nostoc punctiforme PCC 73102 (1)
Synechocystis sp. PCC 6803 substr. GT-T (1)
Nodularia spumigena CCY9414 (1)
Candidatus Atelocyanobacterium thalassae (1)
Daphnia magna (1)
Danio rerio (1)
Rivularia sp. (in: cyanobacteria) (1)
unidentified (1)
Paenibacillus polymyxa (1)
Capilliphycus salinus ALCB114379 (1)
Pseudanabaena (1)

Organisms

microbial mat metagenome (69)
freshwater metagenome (58)
lake water metagenome (37)
hot springs metagenome (25)
Synechocystis sp. PCC 6803 (23)
sediment metagenome (14)
marine metagenome (11)
organismal metagenomes (10)
Synechococcus elongatus PCC 7942 = FACHB-805 (10)
Cyanobacteriota (9)
aquatic metagenome (6)
soil metagenome (6)
Mus musculus (6)
terrestrial metagenome (5)
biofilm metagenome (5)
sea squirt metagenome (4)
algal bloom metagenome (4)
seawater metagenome (4)
biocrust metagenome (4)
Homo sapiens (4)
Picosynechococcus sp. PCC 7002 (3)
marine plankton metagenome (3)
sponge metagenome (3)
Bacteria (3)
Dolichospermum circinale ACBU02 (2)
Aphanothece sacrum (2)
uncultured cyanobacterium (2)
Aplysina aerophoba (2)
Cyanobacteriota bacterium (2)
symbiont metagenome (2)

Repository

ENA (996)
pride (71)
geo (58)
biostudies-arrayexpress (30)
GNPS (22)
MassIVE (17)
MetaboLights (12)
PAXDB (7)
iProX (6)
NODE (4)
BioModels (2)
FAIRDOMHub (1)
GPMDB (1)
jPOST (1)

Tissue

Cell culture (14)
Photosynthetic cell (9)
Leaf (5)
Bacterial protein (1)
Bacteroid (1)
Hepatocyte (1)
Plant cell (1)
Whole body (1)

Disease

Disease free (2)
Not Available (1)

Technology Type

Mass Spectrometry (71)
Shotgun proteomics (38)
Bottom-up proteomics (17)
Data-dependent acquisition (10)
Data-independent acquisition (9)
Mass spectrometry (8)
Mass spectrometry assay (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Gel-based experiment (2)
Mass spectrometry imaging (2)
SRM/MRM (2)
DiaPASEF (1)
HDMSE (1)
MSE (1)
Metaproteomics (1)
Proteogenomics (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Q Exactive HF (6)
MaXis (5)
LTQ XL (4)
Q Exactive Focus (3)
Impact (2)
Synapt G2-S MS (2)
LTQ Orbitrap XL (2)
Q Exactive HF-X (2)
Illumina NovaSeq 6000 (1)
NextSeq 500 (1)
6530A Q-TOF LC/MS (1)
ACQUITY UPLC H-Class (1)
Dionex instrument model (1)
LCQ Classic (1)
LTQ FT (1)
LTQ Orbitrap (1)
MicrOTOF-Q (1)
MicrOTOF-Q II (1)
Q Exactive Plus (1)
TEMPUS TOF (1)
Thermo LCQ Advantage Max (1)
Xevo G2-XS QTof (1)
Instrument (1)
8890 GC/MS (1)
Agilent 1290 LC system coupled to an Agilent 6460 Triple Quadrupole MS (TQMS) with an ESI source (1)
Impact II (1)
LTQ Orbitrap Elite (1)
Orbitrap Exploris 240 (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)

Publication Date

2024 (25)
2022 (24)
2026 (21)
2025 (21)
2020 (15)
2023 (14)
2019 (14)
2016 (13)
2014 (12)
2013 (11)
2015 (9)
2021 (9)
2011 (8)
2018 (8)
2012 (5)
2008 (4)
2009 (2)
2007 (2)
2017 (2)
2010 (1)
2006 (1)

UNIPROT ID/AC

449447.MAE_04790 (6)
449447.MAE_07440 (6)
449447.MAE_10380 (6)
449447.MAE_10510 (6)
449447.MAE_10730 (6)
449447.MAE_10800 (6)
449447.MAE_13300 (6)
449447.MAE_25300 (6)
449447.MAE_41160 (6)
449447.MAE_43300 (6)
449447.MAE_45140 (6)
449447.MAE_45460 (6)
449447.MAE_47540 (6)
449447.MAE_48060 (6)
449447.MAE_48410 (6)
449447.MAE_49540 (6)
449447.MAE_52620 (6)
449447.MAE_54620 (6)
449447.MAE_54990 (6)
449447.MAE_55610 (6)
449447.MAE_58080 (6)
449447.MAE_58140 (6)
449447.MAE_59350 (6)
449447.MAE_60500 (6)
ACKA_MICAN (6)
AMPA_MICAN (6)
APT_MICAN (6)
ARGB_MICAN (6)
ARGC_MICAN (6)
ASSY_MICAN (6)

CHEBI ID

CHEBI:30769 (7)
CHEBI:16708 (6)
CHEBI:30746 (6)
CHEBI:17992 (5)
CHEBI:17533 (5)
CHEBI:17821 (5)
CHEBI:15741 (5)
CHEBI:30915 (5)
CHEBI:16335 (5)
CHEBI:17295 (5)
CHEBI:26078 (5)
CHEBI:30805 (4)
CHEBI:16566 (4)
CHEBI:16704 (4)
CHEBI:28875 (4)
CHEBI:6650 (4)
CHEBI:28842 (4)
CHEBI:17509 (4)
CHEBI:17361 (4)
CHEBI:17568 (4)
CHEBI:16695 (4)
CHEBI:18019 (4)
CHEBI:16015 (4)
CHEBI:16235 (4)
CHEBI:17345 (4)
CHEBI:15428 (4)
CHEBI:18012 (4)
CHEBI:34900 (4)
CHEBI:17596 (4)
CHEBI:15756 (4)

Metabolite Name

Leucine (3)
Glycine (3)
Sucrose (3)
Cholesterol sulfate (2)
Agmatine (2)
Trehalose (2)
Eriojaposide A (2)
Hordatine B (2)
Gluconate (2)
12-Oxo-2,3-dinor-10,15-phytodienoic acid (2)
Ergothioneine (2)
Uridine (2)
Tryptophan (2)
Thymine (2)
Serine (2)
Proline (2)
Malate (2)
FAD (2)
Aspartate (2)
Asparagine (2)
Adenine (2)
Tyrosine (2)
Threonine (2)
Ornithine (2)
Alanine (2)
Valine (2)
Adenosine (2)
Fumarate (2)
AMP (2)
Glycerol (2)

First Public Date

2021 (158)
2025 (119)
2017 (101)
2024 (94)
2013 (90)
2026 (82)
2019 (70)
2020 (63)
2023 (48)
2014 (43)
2016 (38)
2018 (35)
2022 (33)
2015 (20)
2012 (1)
2010 (1)

Modelling Approach

Constraint-based model (2)

Lab affiliation

Friedrich Schiller University Jena (3)
Albert-Ludwigs-Universität Freiburg, Institut für Biologie III, Schänzlestr. 1, 79104 Freiburg, Germany (2)
Department of Biotechnology, Faculty of Converging Sciences and Technologies, Islamic Azad University, Science and Research Branch, Tehran, Iran, Mailbox: 775/14515, Postcode: 1477893855, ORCID: 0000-0001-6656-777X (2)
Quantitative proteomics University of Tuebingen Auf der Morgenstelle 15 72076 Tuebingen Germany (2)
University of Calgary (2)
BBE-CIIMAR – Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Rua General Norton de Matos s/n, Terminal de Cruzeiros do Porto de Leixões, 4450-208 Matosinhos, Portugal (1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, Germany (1)
Biochemistry and Molecular Biology, Michigan State University (1)
Biozentrum der LMU München Pflanzenwissenschaften Großhaderner Str. 2-4 82152 Planegg-Martinsried (1)
Centre Algatech, Institute of Microbiology, Academy of Sciences of the Czech Republic, 6 Novohradská 237, Třeboň, 379 81, Czech Republic (1)
Department of Biochemistry & Molecular Biology Michigan State University (1)
Department of Biochemistry University of Cambridge Cambridge UK CB2 1GA (1)
Department of Biochemistry, University of California, Riverside, USA (1)
Department of Biochemistry, University of Colorado, Boulder, CO 80309, USA Renewable and Sustainable Energy Institute, University of Colorado, Boulder, CO 80309, USA National Renewable Energy Laboratory, Golden, CO 80401, USA (1)
Department of Biology, University of Rome Tor Vergata, Rome, Italy (1)
Department of Chemistry Washington University in St. Louis (1)
Department of Chemistry and Biochemistry, Florida Atlantic University, Boca Raton, Florida. (1)
Department of Clinical and Experimental Medicine, Cell Biology, Faculty of Medicine, Linköping University, Linköping, Sweden. Department of Physiology, Ikerbasque, Faculty of Medicine and Nursing, University of the Basque Country UPV/EHU, Spain (1)
Department of Geoscience, University of Calgary, Calgary Ab,Canada (1)
Department of Microbiology, Miami University, Oxford OH 45056 (1)
Department of Molecular Biology and Biotechnology, The University of Sheffield, UK. (1)
Department of Molecular Genetics and Cell Biology, University of Chicago, Chicago, IL USA 60637 (1)
Department of Organismic Interactions, University of Tübingen (1)
Department of Plant Pathology and Microbiology, Texas A&M University (1)
Department of Plant Physiology, University of Rostock, Einsteinstr. 3, D-18059 Rostock, Germany (1)
Department of Plant and Environmental Sciences, University of Copenhagen (1)
Energy Bioengineering and Geomicrobiology Group, Department of Geoscience, University of Calgary (1)
Environmental Proteomics Department of Biomedical and Clinical Sciences (BKV) Division of Cell Biology (CELLB), level 13 Medical Faculty Linköping University, SE-581 85 Linköping, Sweden. (1)
Faculty of Biology, Technion – Israel Institute of Technology (1)
Faculty of Biology, Technion – Israel Institute of Technology, Haifa 3200003, Israel (1)

IsPrivate

False (2)

Submitter Keywords

FROG (1)

Classification

bacteria (3)
viruses (1)

Modification

4x(2)H labeled dimethylated residue (1)

Study type

Transcription profiling by array (25)
RNA-seq of coding RNA (4)
ChIP-seq (1)

Release Date

2022 (266)
2021 (260)
2025 (240)
2020 (229)
2023 (225)
2024 (204)
2018 (201)
2019 (174)
2017 (159)
2015 (149)
2016 (145)
2014 (134)
2013 (119)
2012 (81)
2011 (71)
2010 (50)
2009 (47)
2008 (46)
2007 (45)
2026 (40)
2006 (32)
2004 (26)
2005 (23)
2002 (19)
1999 (16)
2003 (12)
1998 (10)
2001 (9)
2000 (8)
1997 (1)

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Transcription profiling of human dendritic monocytes treated with LPS (lipopolysaccharide) or CyP (Cyanobacterial Product) reveals cyanobacterial LPS antagonist prevents endotoxin shock and blocks sustained TLR4 stimulation required for cytokine expression

A cyanobacterial LPS antagonist prevents endotoxin shock and blocks sustained TLR4 stimulation required for cytokine expression. We report the identification and biologic characterization of an LPS-like molecule extracted from the cyanobacterium Oscillatoria Planktothrix FP1 (CyP).

ORGANISM(S): Homo sapiens

2007-10-26 | E-GEOD-4748 | biostudies-arrayexpress

A high resolution map of a cyanobacterial transcriptome

Previous molecular and mechanistic studies have identified several principles of prokaryotic transcription, but less is known about the global transcriptional architecture of bacterial genomes. Here we perform a comprehensive study of a cyanobacterial transcriptome, that of Synechococcus elongatus P...

ORGANISM(S): Synechococcus elongatus PCC 7942

2011-05-16 | E-GEOD-29264 | biostudies-arrayexpress

Cyanobacterial

Metatranscriptome of cyanobacterial aggregates

PRJNA359157 | ENA

Springbrook cyanobacterial isolates

Springbrook cyanobacterial metagenomes

PRJNA1030320 | ENA

Cyanobacterial bloom samples

Cyanobacterial bloom samples Metagenome

PRJNA742118 | ENA

Stable isotope probing with 13C-labeled bicarbonate/proteomics of cyanobacterial consortium collected from photobioreactors enriched from soda lake microbial mats in BC, Canada

In this work we used stable isotope probing/proteomics to study uptake of carbon sources by members of the cyanobacterial consortium. The database for protein identification was obtained from assembled metagenomes.

ORGANISM(S): Phormidium sp. OSCR

2022-01-21 | PXD028578 | Pride