Cytoskeletal proteins

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Unknown (3586)
Proteomics (503)
Transcriptomics (421)
Genomics (264)
Other (12)
Metabolomics (5)
Models (2)

Organisms

Homo sapiens (200)
Mus musculus (160)
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Caenorhabditis elegans (6)
Solea senegalensis (5)
Arabidopsis thaliana (5)
Schizosaccharomyces pombe (5)
Danio rerio (4)
Gossypium hirsutum (3)
Dictyostelium discoideum (3)
Xenopus laevis (3)
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Thalassiosira pseudonana CCMP1335 (2)
Petrolisthes cinctipes (2)
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Ictalurus furcatus (1)
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Oncorhynchus kisutch (1)
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Escherichia coli str. K-12 substr. W3110 (1)
Papio anubis (1)
Synechococcus elongatus (1)
Brugia malayi (1)
Sordaria macrospora (1)

Organisms

Homo sapiens (64)
Mus musculus (54)
Rattus norvegicus (11)
Drosophila melanogaster (7)
Sus scrofa (4)
Schizosaccharomyces pombe (2)
Ophelina (1)
Mycoplasma crocodyli (1)
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Mesomycoplasma conjunctivae (1)
Mycoplasma capricolum (1)
Sarcophaga bullata (1)
Tetratrichomonas gallinarum (1)
Mycoplasma mycoides (1)
Mycoplasmopsis fermentans (1)
Metamycoplasma arthritidis (1)
Thalassiosira pseudonana CCMP1335 (1)
Malacoplasma penetrans (1)
Mycoplasmopsis pulmonis (1)
Mesomycoplasma flocculare (1)
Mycoplasma yeatsii (1)
Mesomycoplasma bovoculi (1)
Mycoplasma putrefaciens (1)
Petrolisthes cinctipes (1)
Metamycoplasma hominis (1)
Mycoplasmopsis synoviae (1)
Mycoplasmoides genitalium (1)
Homarus americanus (1)

Repository

pride (366)
biostudies-arrayexpress (285)
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geo (166)
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PAXDB (7)
MetaboLights (3)
GNPS (2)
BioModels (1)
Cell Collective (1)
PeptideAtlas (1)

Tissue

Cell culture (91)
Brain (43)
Epithelial cell (35)
Blood (13)
Kidney (13)
Heart (12)
Blood cell (9)
Blood plasma (8)
Whole body (8)
Embryo (7)
Fibroblast (7)
Permanent cell line cell (7)
T cell (7)
B cell (6)
Lung (6)
Skin (6)
Glomerular visceral epithelial cell (5)
Macrophage (5)
Neuron (5)
Primary cell (5)
Skeletal muscle (5)
Testis (5)
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Cell suspension culture (4)
Early embryonic cell (4)
Erythrocyte (4)
Liver (4)
Melanocyte (4)
Oocyte (4)
Others (1)

Disease

Disease free (12)
Breast cancer (11)
Not Available (9)
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Cardiovascular system disease (5)
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Colon cancer (4)
Duchenne muscular dystrophy (4)
Brain cancer (3)
Hepatocellular carcinoma (3)
Pancreatic cancer (3)
Parkinson's disease (3)
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Brain glioblastoma multiforme (2)
Chronic myeloid leukemia (2)
Epidermolysis bullosa simplex (2)
Focal segmental glomerulosclerosis (2)
Leishmaniasis (2)
Malignant neoplasm of ovary (2)
Melanoma (2)
Myocardial ischemia (2)
HIV encephalitis (1)
Psoriasis vulgaris (1)
Uninfected (1)
Aorta aneurysm (1)
2h after infection with wildtype Streptococcus pyogenes (1)
S enteritidis (1)
Normal (1)

Technology Type

Mass Spectrometry (366)
Shotgun proteomics (184)
Bottom-up proteomics (93)
Data-dependent acquisition (57)
Affinity purification coupled with mass spectrometry proteomics (41)
Data-independent acquisition (26)
Gel-based experiment (20)
SWATH MS (9)
Top-down proteomics (9)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Mass spectrometry (3)
DiaPASEF (3)
Affinity proteomics (2)
All-ion fragmentation (2)
ABI_SOLID, Illumina Genome Analyzer IIx, Affymetrix_GenomeWide_SNP6.34 (1)
Illumina HiSeq 2000 (1)
Glycoproteomics (1)
MSE (1)
Proteogenomics (1)

Instrument Platform

Q Exactive (16)
Orbitrap Exploris 480 (11)
Orbitrap Fusion Lumos (11)
Instrument (9)
Illumina NovaSeq 6000 (8)
LTQ Orbitrap Velos (8)
Q Exactive HF (7)
Illumina HiSeq 4000 (5)
Orbitrap Fusion (5)
LTQ Orbitrap (4)
Orbitrap Eclipse (4)
Q Exactive Plus (4)
NextSeq 500 (3)
LTQ (3)
LTQ Orbitrap Elite (3)
Illumina NovaSeq X (2)
NextSeq 550 (2)
Orbitrap Fusion ETD (2)
Synapt MS (2)
TimsTOF Pro (2)
D1000 ScreenTape Analysis, Qubit Fluorometer. (1)
Other (1)
GenePix Professional 4200A [Axon Instruments] (1)
NextSeq 1000 (1)
Illumina HiSeq 2500 (1)
Impact (1)
LCQ Deca XP Plus (1)
MS:1001581 (1)
MaXis II (1)
Orbitrap Astral (1)

Publication Date

2025 (103)
2026 (92)
2022 (72)
2023 (68)
2012 (63)
2024 (60)
2015 (52)
2010 (51)
2021 (45)
2018 (41)
2016 (40)
2020 (38)
2019 (35)
2014 (28)
2017 (27)
2013 (27)
2008 (24)
2011 (20)
2009 (20)
2007 (19)
2005 (16)
2006 (6)

UNIPROT ID/AC

10116.ENSRNOP00000002498 (2)
10116.ENSRNOP00000003224 (2)
10116.ENSRNOP00000013780 (2)
10116.ENSRNOP00000026719 (2)
10116.ENSRNOP00000034905 (2)
10116.ENSRNOP00000039971 (2)
10116.ENSRNOP00000049080 (2)
10116.ENSRNOP00000050143 (2)
10116.ENSRNOP00000052803 (2)
10116.ENSRNOP00000054637 (2)
10116.ENSRNOP00000061086 (2)
10116.ENSRNOP00000065048 (2)
10116.ENSRNOP00000065507 (2)
10116.ENSRNOP00000066654 (2)
10116.ENSRNOP00000066955 (2)
10116.ENSRNOP00000067711 (2)
1433E_RAT (2)
3HIDH_RAT (2)
6PGL_RAT (2)
9544.ENSMMUP00000000584 (2)
9544.ENSMMUP00000000801 (2)
9544.ENSMMUP00000001594 (2)
9544.ENSMMUP00000001794 (2)
9544.ENSMMUP00000001959 (2)
9544.ENSMMUP00000002322 (2)
9544.ENSMMUP00000002908 (2)
9544.ENSMMUP00000003176 (2)
9544.ENSMMUP00000003379 (2)
9544.ENSMMUP00000003922 (2)
9544.ENSMMUP00000004496 (2)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000247315 (1)

CHEBI ID

CHEBI:26271 (2)
CHEBI:25094 (2)
CHEBI:16040 (2)
CHEBI:17562 (2)
CHEBI:17821 (2)
CHEBI:17154 (2)
CHEBI:16335 (2)
CHEBI:16704 (2)
CHEBI:27897 (2)
CHEBI:15756 (2)
CHEBI:30769 (2)
CHEBI:15422 (1)
CHEBI:143106 (1)
CHEBI:219523 (1)
CHEBI:81810 (1)
CHEBI:53454 (1)
CHEBI:166563 (1)
CHEBI:139445 (1)
CHEBI:41094 (1)
CHEBI:57865 (1)
CHEBI:75539 (1)
CHEBI:89058 (1)
CHEBI:75568 (1)
CHEBI:142495 (1)
CHEBI:456215 (1)
CHEBI:167860 (1)
CHEBI:167740 (1)
CHEBI:31445 (1)
CHEBI:34187 (1)
CHEBI:36021 (1)

Metabolite Name

2-Palmitoylglycerol (2)
1-Monomyristin (2)
Thymine (2)
Citric acid (2)
Adenosine (2)
Cytosine (2)
Palmitic acid (2)
Cytidine (2)
Guanosine (2)
Uridine (2)
3-HYDROXY-4-METHOXYBENZOIC ACID (1)
RIBOSE 5-PHOSPHATE (1)
2-(Benzo[d][1,3]dioxol-5-yl)-1-methylquinolin-4(1H)-one (1)
H-beta-Ala-Tyr-OH (1)
Vanillyl butyl ether (1)
Cyclo(L-Leu-L-Pro) (1)
2-Monolinolenin (1)
N-(2-Hydroxyethyl)piperazine (1)
Decursinol angelate (1)
S-(-)-Cotinine (1)
1-[(6-Chloro-2-methoxyacridin-9-yl)amino]-3-(diethylamino)propan-2-ol (1)
Hexadecanenitrile (1)
1-Amino-4-methylpiperazine (1)
H-Ser-His-OH (1)
Undeca-2,5,8-trienoylcarnitine (1)
2,3-Dihydrofarnesol (1)
Histidylprolineamide (1)
2-(1-Piperazinyl)pyrimidine (1)
1,3-Propanediol (1)
Spinacine (1)

First Public Date

2014 (46)
2026 (28)
2013 (28)
2025 (25)
2024 (17)
2023 (13)
2022 (11)
2015 (11)
2020 (10)
2021 (8)
2019 (8)
2018 (8)
2017 (6)
2016 (5)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (4)
Medical Bioanalytics Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen (3)
University Hospital Cologne (3)
Chronic Disease Programme, UFIEC, Instituto de Salud Carlos III, Majadahonda, E-28220 Madrid, Spain. (2)
Department of Biochemistry, University of Cambridge (2)
Department of Biomedical Sciences, University of Padova, Italy (2)
Department of Genome Sciences, University of Washington (2)
Department of Medicine, Nephrology and Pharmacological Sciences, Icahn School of Medicine at Mount Sinai (2)
Department of Molecular Microbiology & Immunology Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, Oregon 97239, USA (2)
Department of Physical Therapy University of Florida (2)
Dept. of Molecular and Cellular Biology, University of Geneva (2)
Division of Cell Matrix Biology & Regenerative Medicine (L5) / Division of Cell Matrix Biology & Regenerative Medicine, University of Manchester (2)
III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (2)
Macquarie University (2)
Massachusetts Institute of Technology, Department of Biological Engineering, David H Koch Institute for Integrative Cancer Research (2)
Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences (2)
The University of Melbourne (2)
University of Padova (2)
zhejiang university (2)
1 Biochemistry & Microbiology, University of Victoria, Victoria, BC, Canada 2 Genome BC Proteomics Centre, University of Victoria, Victoria, BC, Canada (1)
1 Department of Molecular Neurosciences, Center for Brain Research, Medical University of Vienna, Spitalgasse 4, A-1090 Vienna, Austria; 2 Department of Neuroscience, Karolinska Institutet, Retzius väg 8, SE-17177 Stockholm, Sweden (1)
1) Vascular Biology Program, Boston Children's Hospital, Boston, MA, United States 2) Department of Surgery, Boston Children's Hospital and Harvard Medical School, Boston, MA, United States (1)
1Department of Life Sciences, Ben-Gurion University of the Negev Beer Sheva, 84105 Israel (1)
1The First Department of Clinical Medicine, Fujian University of Traditional Chinese Medicine, Fuzhou 350122, Fujian Province, China. 2Medical Genetic Diagnosis and Therapy Center of Fujian Maternity and Child Health Hospital, College of Clinical Medicine for Obstetrics & Gynecology and Pediatrics, Fujian Medical University, Fujian Provincial Key Laboratory of Prenatal Diagnosis and Birth Defects, Fuzhou 350001, Fujian Province, China. (1)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Analytical Chemistry Lab Fondazione Istituto Italiano di Tecnologia Via Morego 30, 16163 Genova Italy (1)
Associate Professor APAF Director Australian Proteome Analysis Facility (APAF) Dept. Chemistry and Biomolecular Sciences E8C310, Research Park Drive Macquarie University Sydney NSW 2109 Australia Secretary, Australasian Proteomics Society (1)
Associate Professor, Department of Chemistry and Biochemistry, University of Maryland, College Park (1)
Associate Professor, Department of Neurology, Yale University School of Medicine (1)
Associate Professor, The Swire Institute of Marine Sciences and School of Biological Sciences, The University of Hong Kong, Hong Kong (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Classification

bacteria (4)
protozoa (1)

Modification

15.994915 (2)
Not available (2)
-17.026549 (1)
10.008269 (1)
227.126991 (1)
42.010565 (1)
45.029395 (1)
4x(15)N labeled L-arginine (1)
58.005479 (1)
9.030194 (1)

Study type

Transcription profiling by array (213)
RNA-seq of coding RNA (33)
ChIP-seq (11)
Transcription profiling by SAGE (6)
Unknown experiment type (5)
ATAC-seq (2)
Other (2)
RNAi profiling by array (1)
ChIP-chip by array (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by high throughput sequencing (1)
Comparative genomic hybridization by array (1)
Hi-C (1)
RIP-seq (1)
Single nucleus RNA sequencing (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)
CUT&RUN (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (285)
2022 (258)
2021 (256)
2023 (249)
2020 (231)
2024 (218)
2015 (207)
2014 (206)
2019 (203)
2018 (187)
2016 (184)
2012 (180)
2010 (172)
2017 (171)
2013 (160)
2011 (140)
2009 (98)
2008 (95)
2007 (72)
2006 (66)
2026 (56)
2005 (38)
2004 (30)
2000 (22)
2002 (18)
2001 (16)
2003 (15)
1999 (15)
1998 (12)
1997 (9)

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A putative network of actin-associated cytoskeletal proteins in glomerular podocytes defined by co-purified mRNAs

Identification of a putative network of actin-associated cytoskeletal proteins in glomerular podocytes defined by co-purified mRNAs. An experimental purification in which a presumed RNA binding protein was used for an RNA immunoprecipitation and microarray analysis (RIP-CHIP). Total cell extracts w...

ORGANISM(S): Mus musculus

2009-08-01 | E-GEOD-16942 | biostudies-arrayexpress

Ribonucleoprotein immunoprecipitation of fission yeast to study myosin proteins and other cytoskeletal components

Ribonucleoprotein immunoprecipitation microarray (RIp-chip) study using various myosin proteins and other cytoskeletal components from the fission Schizosaccaromyces pombe

ORGANISM(S): Schizosaccharomyces pombe

2009-09-01 | E-TABM-656 | biostudies-arrayexpress

Immunopurification results of cytoskeletal motor proteins in S. cerevisiae

The accompanying dataset is the result of a systematic study to identify the RNA cargoes associated with the cytoskeletal motor proteins of Saccharomyces cerevisiae. We immunopurified, via the use of integrated, C-terminal GFP and 9Myc tags, the five actomyosin motors, Myo1, Myo2, Myo3, Myo4, and My...

ORGANISM(S): Saccharomyces cerevisiae

2012-01-27 | E-GEOD-35343 | biostudies-arrayexpress

RNA-seq in breast cancer cell lines after manipulation of miR-23b expression

RNA sequencing technology has been carried out in order to evaluate mRNA expression changes after manipulation of miR-23b in both MCF-7 and MDA-MB-231 breast cancer cell lines Our study implicates miR-23b in cytoskeletal remodeling in breast cancer. To evaluate the entire set of genes modulated by m...

ORGANISM(S): Homo sapiens

2013-05-01 | E-GEOD-37918 | biostudies-arrayexpress

Arabidopsis acton binding proteins WLIM2A links PAMP-triggered immunity and cytoskeletal organization

PRJNA990758 | ENA

Shroom3 Affects Neuroepithelial Morphogenesis through Regulating Cytoskeletal Proteins in Cynomolgus Monkey’s Organoids

PRJNA900552 | ENA

Missense mutations in linker-2 of KLF1 impair expression of membrane transporters and cytoskeletal proteins to cause hemolysis

PRJNA1004227 | ENA

Cytoskeletal Proteins in Myotendinous Junctions of Human Extraocular Muscles.

Not available

S-EPMC7900863 | biostudies-literature

Cytoskeletal Proteins in Cancer and Intracellular Stress: A Therapeutic Perspective.