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ProteomicsMDR K. penumoniae, A. baumannii, E. coli, and P. aeruginiosa SWATH
This study elucidates the whole proteome changes in the MDR isolates of K. penumoniae, A. baumannii, E. coli, and P. aeruginiosa in the presence of Ampicillin, Kanamycin, and Nalidixic acid. Label-free SWATH-MS is used for protein quantitation of antibiotics treated and untreated samples.
ORGANISM(S): Klebsiella pneumoniae Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 Klebsiella pneumoniae ATCC BAA-2146 Bacteria 
2023-07-26 | PXD039154 | Pride
Swath Mdr K. pneumoniae A. baumannii 
TranscriptomicsTranscriptome in Col, C24, and their F1 at 10 DAS
We compared the expression among three lines, Col, C24, and their hybrids at 10 days after sowing (DAS). Whole plants without root in Col, C24, and their F1 hybrids with three replications.
ORGANISM(S): Arabidopsis thaliana 
2013-02-19 | E-GEOD-32281 | biostudies-arrayexpress
ProteomicsA differential proteomic approach highlighted differences induced by plant growth promoting bacteria in Solanum lycopersicum treated with Kocuria rhizophila and Streptomyces violaceoruber
During the last decades, the use of plant growth promoting bacteria (PGPB) has been found to increase crop yield and quality and to confer abiotic and biotic stress tolerance. However, until now the PGPB mechanism to enhance plant performances is not clearly defined. Recently, our findings demonstra...
ORGANISM(S): Solanum lycopersicum 
2024-05-02 | PXD038137 | Pride
Proteomics Plant growth promoting bacteria Tomato 
TranscriptomicsmRNA-Seq of Daphnia magna exposed to acesulfame K and its photodegradation products against untreated control groups
The experiment investigates how the artificial sweetener acesulfame K and its photodegradation products affect the gene expression in the freshwater invertebrate Daphnia magna. Juvenile D. magna were subjected to an acute immobilization test (OECD Guideline 202) followed by RNA extraction and transc...
ORGANISM(S): Daphnia magna 
2026-09-25 | E-MTAB-17689 | biostudies-arrayexpress
TranscriptomicsMethanol effect on an E. coli BW25113 strain expressing heterologous mdh and das enzymes during or after growth on xylose
In this project we used the strain E. coli BW25113 ΔfrmA::frt (Δ(araD-araB)567, ΔlacZ4787(::rrnB-3), λ-, rph-1, Δ(rhaD-rhaB)568, hsdR514, ΔfrmA(::frt)) from the Keio collection (Baba et al. 2006). The plasmid {pSEVA424_mdh-das} (Low-copy-number, lacIq/Ptrc promoter, RK2 ori, SmR) from Silva-Rocha et...
ORGANISM(S): Escherichia coli K-12 
2020-07-10 | E-MTAB-8909 | biostudies-arrayexpress
UnknownDemyelinating strain of mouse hepatitis virus infection bridging innate and adaptive immune response in the induction of demyelination.
Not available
S-EPMC7106046 | biostudies-literature
TranscriptomicsmRNA-Seq of Danio rerio exposed to acesulfame K and its photodegradation products against untreated control groups
The experiment investigates how the artificial sweetener acesulfame K and its photodegradation products affect the gene expression in the teleost fish Danio rerio. The main test including transcriptomics, was conducted with 10 µg/L and 100 mg/L as test concentrations. Pooled animals from each exposu...
ORGANISM(S): Danio rerio 
2026-09-25 | E-MTAB-17688 | biostudies-arrayexpress
TranscriptomicsHigh resolution temporal profiling of gene expression during Arabidopsis leaf development (senescence process)
Leaf senescence is an essential developmental process that involves altered regulation of thousands of genes and changes in many metabolic and signaling pathways resulting in massive physiological and structural changes in the leaf. The regulation of senescence is complex and although several senesc...
ORGANISM(S): Arabidopsis thaliana 
2011-03-24 | E-GEOD-22982 | biostudies-arrayexpress
TranscriptomicsEvaluating the Impact of Sequencing Depth on Transcriptome Profiling in Human Adipose
Recent advances in RNA sequencing (RNA-Seq) have enabled the discovery of novel transcriptomic variations that are not possible with traditional microarray-based methods. Tissue and cell specific transcriptome changes during pathophysiological stress, in disease cases versus controls and in response...
ORGANISM(S): Homo sapiens 
2013-07-12 | E-GEOD-46323 | biostudies-arrayexpress
UnknownMechanism of potassium ion uptake by the Na(+)/K(+)-ATPase.
Not available
S-EPMC4515779 | biostudies-literature
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