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TranscriptomicsTranscriptome in Col, C24, and their F1 at 10 DAS
We compared the expression among three lines, Col, C24, and their hybrids at 10 days after sowing (DAS). Whole plants without root in Col, C24, and their F1 hybrids with three replications.
ORGANISM(S): Arabidopsis thaliana 
2013-02-19 | E-GEOD-32281 | biostudies-arrayexpress
TranscriptomicsMethanol effect on an E. coli BW25113 strain expressing heterologous mdh and das enzymes during or after growth on xylose
In this project we used the strain E. coli BW25113 ΔfrmA::frt (Δ(araD-araB)567, ΔlacZ4787(::rrnB-3), λ-, rph-1, Δ(rhaD-rhaB)568, hsdR514, ΔfrmA(::frt)) from the Keio collection (Baba et al. 2006). The plasmid {pSEVA424_mdh-das} (Low-copy-number, lacIq/Ptrc promoter, RK2 ori, SmR) from Silva-Rocha et...
ORGANISM(S): Escherichia coli K-12 
2020-07-10 | E-MTAB-8909 | biostudies-arrayexpress
ProteomicsA differential proteomic approach highlighted differences induced by plant growth promoting bacteria in Solanum lycopersicum treated with Kocuria rhizophila and Streptomyces violaceoruber
During the last decades, the use of plant growth promoting bacteria (PGPB) has been found to increase crop yield and quality and to confer abiotic and biotic stress tolerance. However, until now the PGPB mechanism to enhance plant performances is not clearly defined. Recently, our findings demonstra...
ORGANISM(S): Solanum lycopersicum 
2024-05-02 | PXD038137 | Pride
Proteomics Plant growth promoting bacteria Tomato 
TranscriptomicsComparison of gene expression of miltefosine responsive Vs miltefosine unresponsive Leishmania donovani promastigotes
The current study aims to study change in gene expression profile of miltefosine resistance L. donovani with respect to miltefosine responsive L. donovani. Agilent one-color experiment,Organism: Leishmania donovani, Microarray GeneExpression 8x15k designed by Genotypic Technology Private Limited. (A...
ORGANISM(S): Leishmania donovani 
2013-08-05 | E-GEOD-45496 | biostudies-arrayexpress
TranscriptomicsDAS graphene-based feeder-free culture system for human induced pluripotent stem cells
Graphene has been selected as a candidate for synthetic feeder-free culture substrate guiding human/mouse multipotent stem cell lineage specification, and culturing pluripotent stem cells in a number of studies. However, conventional graphene is not an ideal biomaterial to maintain the pluripotency ...
ORGANISM(S): Homo sapiens 
2017-02-09 | GSE66439 | GEO
TranscriptomicsGenotyping of Cowpea using a Soybean Genome Array
Background:; Cowpea (Vigna unguiculata L. Walp) is an important food and fodder legume of the semiarid tropics and subtropics worldwide, especially in sub-Saharan Africa. High density genetic linkage maps are needed for marker assisted breeding but are not available for cowpea. A single feature poly...
ORGANISM(S): Vigna unguiculata 
2008-04-07 | E-GEOD-10284 | biostudies-arrayexpress
TranscriptomicsGrowth and Secondary Metabolite Responses to Different UV Wavelength in Canola (Brassica napus L.) in a Plant Factory with Artificial Light
This study aimed to evaluate the effects of UV-B wavelength regions (< 300 nm) in canola plants (Brassica napus L.). Agilent One-Color Gene Expression Microarray analysis was conducted using an Agilent-022520 Brassica napus 4x44K Array.
ORGANISM(S): Brassica napus 
2022-03-18 | E-MTAB-11596 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of wheat roots from drought-tolerant wheat after drought and normal watering treatments
Plant material consisted of synthetic hexaploid wheat germplasm into the ‘Opata’ background (‘Altar 84/ Aegilops squarrosa (TAUS)//Opata’) . Plants were grown at a density of 9-11 individuals per 20cm x 10cm (diameter x height) plastic pot containing 1500g well-rinsed Turface MVP® medium (Profile...
ORGANISM(S): Triticum aestivum 
2006-12-01 | E-MEXP-831 | biostudies-arrayexpress
TranscriptomicsEvaluating the Impact of Sequencing Depth on Transcriptome Profiling in Human Adipose
Recent advances in RNA sequencing (RNA-Seq) have enabled the discovery of novel transcriptomic variations that are not possible with traditional microarray-based methods. Tissue and cell specific transcriptome changes during pathophysiological stress, in disease cases versus controls and in response...
ORGANISM(S): Homo sapiens 
2013-07-12 | E-GEOD-46323 | biostudies-arrayexpress
TranscriptomicsHigh-throughput sequencing analysis identify miRNAs in 7dpf F1-zebrafish under β-diketone antibiotics exposure to F0-zebrafish
Small RNA high-throughput sequencing technology was used to characterize the miRNAs in F1-zebrafish after 90-day β-diketone antibiotic (DKA) exposure to F0-zebrafish at 6.25 and 12.5 mg/L. The small RNA libraries from 7-dpf F1-zebrafish were constructed. In total, 10,117,347, 9,818,830 and 12,049,...
ORGANISM(S): Danio rerio 
2016-07-30 | E-GEOD-85004 | biostudies-arrayexpress
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