Das S P SP - OmicsDI

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Unknown (366)
Transcriptomics (39)
Proteomics (6)
Genomics (1)
Metabolomics (1)

Organisms

Rattus norvegicus (17)
Mus musculus (14)
Homo sapiens (6)
Arabidopsis thaliana (2)
Myzus persicae (1)
Plasmodium vivax (1)
Shewanella oneidensis MR-1 (1)
Thermus thermophilus HB8 (1)
Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 (1)
Bacteria (1)
Chlorella sp. FC2 IITG (1)
Hordeum vulgare subsp. vulgare (1)
Klebsiella pneumoniae (1)
Klebsiella pneumoniae ATCC BAA-2146 (1)
Vibrio sp. S-1 (1)

Repository

biostudies-arrayexpress (41)
pride (6)
MetaboLights (1)

Tissue

Cell culture (1)
Cochlea (1)
Lower epidermis (1)
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Disease

Normal (3)
Acinetobacter infectious disease (1)

Technology Type

Mass Spectrometry (6)
Shotgun proteomics (3)
Bottom-up proteomics (2)
Mass spectrometry (1)
Data-dependent acquisition (1)
SWATH MS (1)

Instrument Platform

Scanning hardware (3)
Illumina NovaSeq 6000 (2)
Covaris sonicator, PCR thermocycler, magnetic rack for SPRI bead clean-up (1)
Liquid-nitrogen mortar and pestle, benchtop microcentrifuge, vortex mixer (1)
Dissecting tools, liquid nitrogen, −80 °C freezer (1)
Controlled-environment growth chamber (short-day; 8 h light / 16 h dark) (1)
ScanArray Express HT [PerkinElmer] (1)
NextSeq 550 (1)
Illumina HiSeq 4000 (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2015 (5)
2012 (5)
2013 (4)
2009 (4)
2006 (4)
2026 (3)
2021 (3)
2010 (3)
2008 (3)
2023 (2)
2014 (2)
2011 (2)
2007 (2)
2004 (2)
2020 (1)
2016 (1)
2019 (1)
2018 (1)

CHEBI ID

CHEBI:109895 (1)
CHEBI:116314 (1)
CHEBI:125610 (1)
CHEBI:131991 (1)
CHEBI:133094 (1)
CHEBI:134277 (1)
CHEBI:134931 (1)
CHEBI:138389 (1)
CHEBI:139123 (1)
CHEBI:139134 (1)
CHEBI:139135 (1)
CHEBI:143728 (1)
CHEBI:15354 (1)
CHEBI:15603 (1)
CHEBI:156280 (1)
CHEBI:15728 (1)
CHEBI:15815 (1)
CHEBI:158716 (1)
CHEBI:15929 (1)
CHEBI:15940 (1)
CHEBI:159461 (1)
CHEBI:159474 (1)
CHEBI:16092 (1)
CHEBI:161026 (1)
CHEBI:16196 (1)
CHEBI:162315 (1)
CHEBI:162555 (1)
CHEBI:16390 (1)
CHEBI:163949 (1)
CHEBI:164205 (1)

Metabolite Name

(3,5-dimethylphenyl)-[4-(3-ethyl-1,2,4-triazol-4-yl)piperidin-1-yl]methanone (1)
(R)-4-((8S,9S,10R,13R,14S,17R)-10,13-dimethyl-3-oxo-2,3,6,7,8,9,10,11,12,13,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
1-(2-methylbutan-2-yloxy)-3-(2-methylpropylamino)propan-2-ol (1)
1-[2-[3-(1-propan-2-ylsulfonylazetidin-3-yl)-1,2,4-oxadiazol-5-yl]pyrrolidin-1-yl]ethanone (1)
1-[5-amino-3-(2-methylphenyl)-1,2,4-triazol-1-yl]-2,2-dimethylpropan-1-one (1)
12-Ketolithocholic Acid (1)
13,14-dihydro-19-hydroxyPGE1 (1)
13E-Docosenamide (1)
14,15-DiHETE (1)
15,19-hydroxy Prostaglandin E1 (1)
2,3,4-Trihydroxbenzophenone (1)
2,3-dihydrobenzofuran (1)
2,8-Quinolinediol (1)
2-((4R)-4-((5R,7R,8R,9S,10S,12S,13R,17R)-7,12-dihydroxy-10,13-dimethyl-3-oxohexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)
2-(1-acetylpiperidin-4-yl)-1-(3-ethyl-3-hydroxy-7-azaspiro[3.5]nonan-7-yl)ethanone (1)
2-(3-benzyl-2-oxoimidazolidin-1-yl)-N-propylacetamide (1)
3-(1-methyl-2-oxoimidazo[4,5-b]pyridin-3-yl)-N-propan-2-ylpyrrolidine-1-carboxamide (1)
3-Indolepropionic acid (1)
3-Ketocholanic Acid (1)
3-Nitrotyrosine (1)
3-ketosphinganine (1)
4',5,7-Trihydroxyflavanone (1)
4-Guanidinobutanoic acid (1)
4-Hydroxyquinoline (1)
4-phenyl-2-piperidin-1-ylpyrimidine-5-carboxylic acid (1)
5,6-Dihydro-5-methyluracil (1)
5alpha-androst-16-en-3-one (1)
5beta-Cholanic acid-3alpha,12alpha-diol-7-one (1)
5beta-Cholanic acid-3alpha-OL-6,7-dione (1)
5beta-Cholanic acid-3alpha-OL-7,12-dione (1)

Study type

Transcription profiling by array (34)
RNA-seq of coding RNA (3)
Transcription profiling by SAGE (1)
Animal - High-throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (61)
2021 (49)
2025 (49)
2023 (41)
2024 (37)
2017 (24)
2019 (22)
2016 (21)
2018 (19)
2020 (18)
2015 (15)
2013 (9)
2014 (6)
2012 (6)
2010 (6)
2009 (6)
2026 (4)
2006 (4)
2011 (3)
2008 (3)
2007 (2)
2004 (2)

Lab affiliation

Functional Genomics Laboratory, Translational Health Science and Technology Institute (1)
Laboratório de Otorrinolaringologia/LIM 32, Hospital das Clínicas HCFMUSP, Faculdade de Medicina, Universidade de São Paulo, São Paulo, SP, Brasil. (1)
Molecular Genetics Laboratory, Infection and Immunology Division, Translational Health Science and Technology Institute, India (1)
Proteomics lab, Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay (1)
Royal Holloway, University of London (1)
The Institute of Cancer Research, London (1)

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Natural anitsense transcripts in Plasmodium vivax clinical isolates

Plasmodium vivax is the most geographically widespread human malaria parasite causing approximately 130-435 million infections annually. It is an economic burden in many parts of the world and poses a public health challenge along with the other Plasmodium sp. The biology of this parasite is very li...

ORGANISM(S): Plasmodium vivax

2014-01-16 | E-GEOD-45165 | biostudies-arrayexpress

MDR K. penumoniae, A. baumannii, E. coli, and P. aeruginiosa SWATH

This study elucidates the whole proteome changes in the MDR isolates of K. penumoniae, A. baumannii, E. coli, and P. aeruginiosa in the presence of Ampicillin, Kanamycin, and Nalidixic acid. Label-free SWATH-MS is used for protein quantitation of antibiotics treated and untreated samples.

ORGANISM(S): Klebsiella pneumoniae Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 Klebsiella pneumoniae ATCC BAA-2146 Bacteria

2023-07-26 | PXD039154 | Pride

De novo transcriptome analysis of halotolerant bacterium Staphylococcus sp. strain P-TSB-70 isolated from East coast of India: In search of salt stress tolerant genes.

Not available

S-EPMC7010390 | biostudies-literature

Chlorella sp. FC2 IITG temporal nitrogen-starvation LC-MSMS

Proteomics study in non-model alga Chlorella FC2 IITG (FC2) challenged with nitrogen starvation for 120 h. Three different nitrogen starvation time-points 40 h, 88 h and 120 h was compared with 0 h (nitrogen sufficient condition). Comparative proteomics analysis was performed using 4-plex isobaric t...

ORGANISM(S): Chlorella sp. FC2 IITG

2018-10-26 | PXD004712 | Pride

Lc-msms Temporal study Lipid induction Nitrogen starvation Chlorella sp.

Differential gene expression in RA synovial biopsies from responders versus non-responders to adalimumab therapy

TNF antagonists are routinely used in severe rheumatoid arthritis (RA) patients who failed conventional DMARD therapy. According to large clinical trials, the three available drugs (adalimumab, infliximab and etanercept) display similar effects in terms of efficacy, tolerability and side effects. Th...

ORGANISM(S): Homo sapiens

2009-04-15 | E-GEOD-15602 | biostudies-arrayexpress

Drug resistant Vibrio cholerae and Vibrio paracholerae clinical isolates LC-MS/MS

This study evaluated the whole proteome together with virulent proteins differentially expressed in clinical isolates of drug resistant Vibrio cholerae and Vibrio paracholerae under two culture conditions (LB and AKI media).

ORGANISM(S): Vibrio sp. S-1

2026-03-24 | PXD057625 | Pride

Mdr Pathogenic bacteria Lcmsms

Functional characterization of the Saccharomyces cerevisiae protein Chl1 reveals the role of sister chromatid cohesion in the maintenance of spindle length during S-phase arrest.

Not available

S-EPMC3190345 | biostudies-literature

An antibacterial compound pyrimidomycin produced by Streptomyces sp. PSAA01 isolated from soil of Eastern Himalayan foothill.

Not available

S-EPMC9206078 | biostudies-literature

Streptomyces sp SM01 isolated from Indian soil produces a novel antibiotic picolinamycin effective against multi drug resistant bacterial strains.

Not available

S-EPMC7308314 | biostudies-literature