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TranscriptomicsTranscriptomic analysis of an evolutionary strain of Saccharomyces cerevisiae resistant to cobalt 10mM
We have employed whole genome microarray expression profiling as a discovery platform to identify genes implicated in the resistance to cobalt in Saccharomyces cerevisiae. The evolved strains and the wild type were harvested in exponential phase WT (CEN.PK), the evolved strain (CI25E) and the evolve...
ORGANISM(S): Saccharomyces cerevisiae 
2012-07-31 | E-GEOD-39185 | biostudies-arrayexpress
TranscriptomicsMeiotic behavior analysis of a balanced reciprocal translocation in the pig
Balanced constitutional reciprocal translocations are the most common structural chromosomal rearrangements identified in man and pigs. Carriers are generally phenotypically normal, but such rearrangements frequently lead to reproductive disorders. In reciprocal translocation heterozygotes, the hom...
ORGANISM(S): Sus scrofa 
2016-06-30 | E-GEOD-80693 | biostudies-arrayexpress
ProteomicsCirculating tumour cells shed large extracellular vesicles in capillary-scale bifurcations
Data Independant Acquisition (DIA)-based proteomics to characaterise the proteins identified in Large Extracellular vesicles (LEVs) samples.
ORGANISM(S): Homo sapiens (Human) 
2025-09-01 | PXD050444 | Pride
Large extracellular vesicles 
TranscriptomicsExpression data of control and adult-induced Bcl11b mutant dentate gyrus granule cells 4 weeks after induction.
Bcl11b plays an important role in postnatal dentate gyrus development and adult neurogenesis. To determine its role in adult neurogenesis independant from postnatal development the Bcl11b mutation was induced at the age of 2 months. Microarray analysis was performed on RNA isolated 4 weeks after the...
ORGANISM(S): Mus musculus 
2018-03-21 | GSE111494 | GEO
TranscriptomicsmiRNA analysis of murine fibroblasts subjected to acute oxidative stress
Analysis of miRNA modulated by H2O2 treatment in murine fibroblasts. The hypothesis in the present study is that stress balance the level of some miRNAs. These particular miRNAs may target key proteins involved in stress and thus modulate cellular response to stress. Total RNA obtained from 2 indepe...
ORGANISM(S): Mus musculus 
2011-11-01 | E-GEOD-26194 | biostudies-arrayexpress
TranscriptomicsExpression data of Arabidopsis overexpressing ERF96 gene
Arabidopsis overexpressing ERF96 are more resistant against necrotrophic pathogen such as Botrytis cinerea. ERF96 is a member of the AP2/ERF superfamily of transcription factor. We used Microarray to determine which gene expressions are up-regulated due to an accumulation of ERF96 and to identify th...
ORGANISM(S): Arabidopsis thaliana 
2014-07-31 | E-GEOD-58231 | biostudies-arrayexpress
TranscriptomicsExpression data from infected (Xanthomonas oryzae pv. Oryzae (P10)) leaf in japonica rice (cv. Y73)
Previously, we successfully introduce the bacterial blight resistance trait from Oryza meyeriana into O. sativa using asymmetric somatic hybridization with O. meyeriana as the donor species. After years of breeding, a progeny named Y73 was generated with recurrent parent O. sativa L. ssp. japonica c...
ORGANISM(S): Oryza sativa 
2012-02-27 | E-GEOD-36093 | biostudies-arrayexpress
TranscriptomicsSmall RNA pyrosequencing in the protozoan parasite Entamoeba histolytica reveals strain-specific small RNAs that target virulence genes
We provided a full spectrum analysis for E. histolytica AGO2-2 associated 27nt small RNAs. Additionally, comparative analysis of small RNA populations from virulent and non-virulent amebic strains indicates that small RNA populations may regulate virulence genes. AGO2-2 bound small RNAs from E. hist...
ORGANISM(S): Entamoeba histolytica 
2013-01-24 | E-GEOD-43668 | biostudies-arrayexpress
TranscriptomicsGene expression analysis of TIL rich HPV driven head and neck tumours reveals a distinct B-cell signature when compared to HPV independent tumours.
Purpose: Human papilloma virus (HPV) associated head and neck squamous cell carcinoma (HNSCC) has a better prognosis than HPV(-) negative cancer. This may be due, in part, to the higher number of tumour infiltrating lymphocytes (TIL) in HPV(+) tumours. We used RNAseq to evaluate whether these differ...
ORGANISM(S): Homo sapiens 
2016-09-01 | E-GEOD-72536 | biostudies-arrayexpress
TranscriptomicsLeishmania RNA Virus controls the severity of muco-cutaneous leishmaniasis
Comparison of the transcriptome of bone marrow derived macrophages infected with either metastasizing (M+, Lg13) or non-metastasizing (M-, Lg17) parasites after 24 hours of infection. 3 experimental conditions; M+ infected BMMf vs. uninfected BMMf, M- infected BMMf vs. uninfected BMMf, M+ infected B...
ORGANISM(S): Mus musculus 
2011-01-03 | E-GEOD-21418 | biostudies-arrayexpress
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