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TranscriptomicsiPS2-sci-sec dataset on hPSC derived cardiomyocytes at day 23
Proof of principle and testing experiments on  iPS2-sci-seq have been performed on two batches of hPSC-derived cardiomyocytes at day 23. Cells have been treated with Tetracycline throughout differentiation. For this experiment it was used a 2-level of indexing sci-RNAseq protocol (Cao J. et. al, Sci...
ORGANISM(S): Homo sapiens 
2025-10-27 | E-MTAB-14102 | biostudies-arrayexpress
ProteomicsAlphaTims: Indexing unprocessed trapped ion mobility spectrometry - time of flight data for fast and easy accession and visualization
High resolution mass spectrometry-based proteomics generates large amounts of data, even in the standard liquid chromatography (LC) – tandem mass spectrometry configuration. Adding an ion mobility dimension vastly increases the acquired data volume, challenging both analytical processing pipe...
ORGANISM(S): Homo sapiens (Human) 
2021-07-30 | PXD027359 | Pride
Software. Time of flight Ion mobility spectrometry Data indexing Mass spectrometry Data visualization 
UnknownTORO Indexer: a PyTorch-based indexing algorithm for kilohertz serial crystallography.
Not available
S-EPMC11299607 | biostudies-literature
UnknownData Resource Profile: the Scottish Social Care Survey (SCS) and the Scottish Care Home Census (SCHC).
Not available
S-EPMC8142955 | biostudies-literature
ProteomicsFast open modification spectral library searching through approximate nearest neighbor indexing
Open modification searching (OMS) is a powerful search strategy that identifies peptides carrying any type of modification by allowing a modified spectrum to match against its unmodified variant by using a very wide precursor mass window. A drawback of this strategy, however, is that it leads to a l...
ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast) 
2021-05-25 | PXD009861 | Pride
Ptm Open modification searching Spectral library 
UnknownIndexing and partitioning the spatial linear model for large data sets.
Not available
S-EPMC10619847 | biostudies-literature
UnknownSPIND: a reference-based auto-indexing algorithm for sparse serial crystallography data.
Not available
S-EPMC6327178 | biostudies-literature
MetabolomicsHUMAN Ring Trial - Standards detection - Reverse phase

To better understand the effect of different LC-MS setups on metabolite detection, five laboratories analyzed 1298 standard compounds obtained from the MetaSci metabolite standard library, classified as 'Human Endosome' (HE), 'Food Exposome' (FE), 'Chemical Exposome' (CE), 'Microbiota Exposome' (...

2026-04-24 | MTBLS14343 | MetaboLights
GenomicsHigh-content single-cell combinatorial indexing
High-content single-cell combinatorial indexing
PRJNA728882 | ENA
GenomicsProfiling single-cell histone modifications using indexing chromatin immunocleavage sequencing
Profiling single-cell histone modifications using indexing chromatin immunocleavage sequencing
PRJNA587152 | ENA
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