Data-independent acquisition (dia) proteomics

Show results for

Proteomics (4251)
Unknown (425)
Metabolomics (18)
Genomics (13)
Other (4)
Transcriptomics (3)
Multiomics (1)

Organisms

Homo sapiens (290)
Mus musculus (73)
Escherichia coli (13)
Saccharomyces cerevisiae (10)
Rattus norvegicus (9)
Bos taurus (9)
Gallus gallus (7)
Aeromonas hydrophila subsp. hydrophila ATCC 7966 (5)
Haemaphysalis longicornis (5)
Rattus rattus (5)
Drosophila melanogaster (4)
Hordeum vulgare (3)
Arabidopsis thaliana (3)
Canis lupus familiaris (3)
Apostichopus japonicus (2)
Ctenopharyngodon idella (2)
Clostridium butyricum (2)
Enterococcus faecalis (2)
Amphioctopus fangsiao (2)
Spirometra erinaceieuropaei (2)
Babesia microti (2)
Glycine max (2)
Escherichia coli str. K-12 substr. MG1655 (1)
Tupaia belangeri chinensis (1)
Cordyceps militaris (1)
Cordyceps cicadae (1)
Radix auricularia (1)
Nodularia douglasiae biwae (1)
Nodularia douglasiae nipponensis (1)
Proteinus (1)

Organisms

Homo sapiens (3)
Mus musculus (2)

Repository

pride (3582)
iProX (288)
MassIVE (191)
jPOST (109)
PanoramaPublic (49)
PeptideAtlas (22)
MetaboLights (16)
ENA (10)
PAXDB (8)
geo (5)
EGA (3)
biostudies-arrayexpress (2)
GNPS (2)
GPMDB (1)
NODE (1)

Tissue

Cell culture (709)
Blood plasma (240)
Brain (230)
Epithelial cell (195)
Liver (151)
Blood serum (108)
Heart (103)
Blood (91)
Lung (91)
Kidney (90)
Permanent cell line cell (76)
Fibroblast (70)
Blood cell (60)
Skin (59)
T cell (54)
Plant cell (52)
Stem cell (46)
Whole body (44)
Macrophage (44)
Colon (43)
Bone marrow (42)
Cerebrospinal fluid (41)
Hepatocyte (40)
Spleen (39)
Others (17)
Kidney (2)
Serum (1)
Lung (1)
Digestive System (1)
Plasma Non-glyco (1)

Disease

Breast cancer (63)
Disease free (53)
Colon cancer (46)
Alzheimer's disease (36)
Cardiovascular system disease (25)
Parkinson's disease (25)
Acute leukemia (20)
Malignant neoplasm of ovary (19)
Cervix carcinoma (18)
Non-small cell lung carcinoma (16)
Type 2 diabetes mellitus (16)
Lung cancer (16)
COVID-19 (15)
Prostate adenocarcinoma (15)
Melanoma (14)
Glioblastoma (14)
Pancreatic ductal adenocarcinoma (13)
Wounds and Injuries (13)
Brain cancer (12)
Lymphoma (11)
Pancreatic cancer (11)
Plasmodium falciparum malaria (10)
Multiple myeloma (10)
Chronic myeloid leukemia (9)
Liver cancer (9)
Obesity (9)
Osteoarthritis (8)
Osteosarcoma (8)
Colorectal cancer (7)
Not Available (1)

Technology Type

Mass Spectrometry (3582)
Data-independent acquisition (2139)
Bottom-up proteomics (1334)
SWATH MS (666)
Shotgun proteomics (539)
Data-dependent acquisition (246)
DiaPASEF (157)
Affinity purification coupled with mass spectrometry proteomics (106)
All-ion fragmentation (88)
HDMSE (81)
Top-down proteomics (49)
MSE (42)
SRM/MRM (31)
Gel-based experiment (30)
Chemical cross-linking coupled with mass spectrometry proteomics (13)
Mass spectrometry (10)
Proteogenomics (10)
Immunopeptidomics (10)
Affinity proteomics (9)
Mass spectrometry assay (6)
Metaproteomics (4)
Mass spectrometry imaging (3)
PAcIFIC (2)

Instrument Platform

TripleTOF 5600 (42)
Orbitrap Exploris 480 (30)
Orbitrap Astral (22)
Orbitrap Fusion Lumos (22)
Q Exactive (16)
TripleTOF 6600 (15)
Q Exactive HF-X (12)
Orbitrap Eclipse (12)
Orbitrap Fusion (11)
TimsTOF Pro (10)
Q Exactive HF (8)
Q Exactive Plus (7)
Orbitrap Fusion ETD (5)
TimsTOF Pro 2 (5)
TimsTOF HT (4)
TimsTOF Ultra (4)
ZenoTOF 7600 (4)
TimsTOF SCP (3)
Orbitrap Exploris 240 (3)
TripleTOF 5600+ (2)
Xevo G2 Q-Tof (2)
TimsTOF (2)
Illumina NovaSeq 6000 (1)
Instrument (1)
Q-Exactive H-FX (1)
Q-TOF mass spectrometer (maXis impact, Bruker) (1)
Q Exactive HFX (1)
Q Exactive HF (Thermo Scientific instrument model) (1)
Xevo G2-XS TOF (1)
Q Exactive plus (Thermo Scientific instrument model) (1)

Publication Date

2026 (1340)
2025 (1129)
2024 (565)
2023 (309)
2022 (255)
2021 (176)
2020 (113)
2019 (90)
2018 (52)
2017 (38)
2014 (24)
2016 (13)
2015 (7)

UNIPROT ID/AC

SEBP3_ARATH (4)
AMPL3_ARATH (4)
F4IB69_ARATH (4)
Q9SUN5_ARATH (4)
ICME_ARATH (4)
3702.AT5G08670.1 (4)
Q9FGU5_ARATH (4)
PMEI4_ARATH (4)
BBE18_ARATH (4)
ADF5_ARATH (4)
ACT8_ARATH (4)
VATL2_ARATH (4)
F4JW93_ARATH (4)
PPX2_ARATH (4)
GLPT2_ARATH (4)
RT12_ARATH (4)
GSTU8_ARATH (4)
SUI12_ARATH (4)
Q9CAQ3_ARATH (4)
PER8_ARATH (4)
O81417_ARATH (4)
F4J9D4_ARATH (4)
RIBF2_ARATH (4)
TPS30_ARATH (4)
Q8GW53_ARATH (4)
O49652_ARATH (4)
GDL60_ARATH (4)
PME46_ARATH (4)
PER38_ARATH (4)
UN931_ARATH (4)

ENSEMBL ID

ENSG00000170477 (16)
ENSG00000147251 (6)
ENSG00000247315 (5)
ENSG00000229353 (4)
ENSG00000204131 (1)

CHEBI ID

CHEBI:17596 (5)
CHEBI:16750 (5)
CHEBI:89487 (4)
CHEBI:17562 (4)
CHEBI:16020 (4)
CHEBI:16704 (4)
CHEBI:16335 (4)
CHEBI:68467 (3)
CHEBI:19702 (3)
CHEBI:19062 (3)
CHEBI:17802 (3)
CHEBI:20607 (3)
CHEBI:20794 (3)
CHEBI:28790 (3)
CHEBI:45996 (3)
CHEBI:27732 (3)
CHEBI:18186 (3)
CHEBI:27897 (3)
CHEBI:16680 (3)
CHEBI:28044 (3)
CHEBI:16811 (3)
CHEBI:73024 (3)
CHEBI:17509 (3)
CHEBI:178092 (2)
CHEBI:178091 (2)
CHEBI:178090 (2)
CHEBI:19688 (2)
CHEBI:19068 (2)
CHEBI:19229 (2)
CHEBI:19228 (2)

Metabolite Name

Citric acid (5)
Adenosine (5)
Uridine (5)
Acetaminophen (4)
Glycocholic acid (4)
Taurodeoxycholic acid (4)
Orotic acid (4)
Succinic acid (4)
Styrene (4)
L-Tyrosine (4)
Azelaic acid (4)
Sebacic acid (4)
Inosine (4)
Pseudouridine (4)
1-methylpseudouridine (3)
Indoline (3)
Erythrose (3)
12-oxo-PDA (3)
N-Acetylneuraminic acid (3)
3-Dehydroquinic acid (3)
Isoquinoline (3)
Deoxycholic acid (3)
Alpha-Linolenoyl ethanolamide (3)
3-[[(2S)-2,4-Dihydroxy-3,3-dimethylbutanoyl]amino]propanoic acid (3)
Hexadecanedioic acid (3)
Glutamic acid (3)
D-Proline (3)
Oxoglutaric acid (3)
5-Hydroxyindoleacetic acid (3)
Glutaric acid (3)

First Public Date

2026 (4)
2025 (2)
2022 (2)
2024 (1)
2021 (1)

Modification

N6 (4)
4-tetrahydrothiazine-3-carboxylic acid (3)
N6-dimethyl-L-lysine (2)
4x(2)H labeled dimethylated residue (1)
2x(15)N labeled L-lysine (1)
Not available (1)
4x(15)N labeled L-arginine (1)

Study type

Proteomic profiling by mass spectrometer (1)
RNA-seq of coding RNA (1)

Release Date

2025 (98)
2023 (64)
2024 (62)
2022 (58)
2021 (41)
2020 (35)
2019 (17)
2018 (11)
2017 (10)
2016 (10)
2015 (10)
2026 (9)
2013 (1)
2012 (1)

Lab affiliation

Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (33)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (33)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (19)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (19)
UCSD (16)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (16)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (16)
DZNE Munich, Neuroproteomics, Feodor-Lynen-Str. 17, 81377 München, Germany (14)
DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany (13)
The University of Melbourne (13)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (12)
Ludwig-Maximilians-Universität München Genzentrum Laboratory for Functional Genome Analysis Feodor-Lynen-Str. 25 D-81377 München (11)
Proteomics facility, Central Science Laboratory, University of Tasmania (10)
Proteomics Core Facility, School of Science, National and Kapodistrian University of Athens, Athens, Greece (9)
Neuroproteomics Group Department of Molecular Neurobiology Max Planck Institute for Multidisciplinary Sciences Hermann-Rein-Str. 3 37075 Goettingen Germany (9)
Department of Biological Sciences, University of Alberta (9)
University of Edinburgh (9)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (8)
IFOM (8)
Professor, Deputy Head of Centre Novo Nordisk Foundation Center for Protein Research University of Copenhagen Copenhagen, DENMARK (7)
Max-Planck-Institute for Biology of Ageing Department of Mitochondrial Proteostasis Joseph-Stelzmann-Str. 9b 50931 Cologne (7)
Yale Cancer Biology Institute (7)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (6)
Institute of Molecular Biology (IMB), 55128 Mainz, Germany; Institute of Developmental Biology and Neurobiology (IDN), Johannes Gutenberg University, 55128 Mainz, Germany (6)
Imperial College London (6)
Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (6)
Faculty of Biology, University of Freiburg, Freiburg, Germany (6)
Dept. Proteomics and Signal Transduction Director at the Max-Planck Institute of Biochemistry (5)
1VIB-UGent Center for Medical Biotechnology, VIB, 9052 Ghent, Belgium 2Department of Biomolecular Medicine, Ghent University, 9052 Ghent, Belgium (5)
Lab of Neuroproteomics, Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, SP, Brazil (5)

Previous page
1 / 472
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 472
Next page

Sort by:

Relevance

Page size

Customized Consensus Spectral Library Building for Untargeted Quantitative Metabolomics Analysis with Data Independent Acquisition Mass Spectrometry and MetaboDIA Workflow

Data independent acquisition-mass spectrometry (DIA-MS) coupled with liquid chromatography is a promising approach for rapid, automatic sampling of MS/MS data in untargeted metabolomics. However, wide isolation windows in DIA-MS generate MS/MS spectra containing a mixed population of fragment ions t...

2018-03-26 | MTBLS417 | MetaboLights

High-performance nano-flow liquid chromatography column combined with high- and low-collision energy data-independent acquisition enables targeted and discovery identification of modified ribonucleotides by mass spectrometry (Data-independent acquisition)

Over 170 post-transcriptional RNA modifications have been described and are common in all kingdoms of life. These modifications range from methylation to complex chemical structures, with methylation being the most abundant. RNA modifications play a key role in RNA folding and function and their ...

2023-10-26 | MTBLS2959 | MetaboLights

2023-10-26 | MTBLS2497 | MetaboLights

Localisation of Organelle Proteins using Data-Independent Acquisition (DIA-LOP)

Subcellular localisation within the proteome fundamentally influences cellular processes, however the development of high-throughput techniques to allow proteome-wide mapping of the cell has proven difficult. Here we present DIA-LOP, an approach capable of high-throughput spatial proteome mapping wi...

ORGANISM(S): Homo sapiens (Human)

2025-09-29 | PXD063082 | Pride

Untargeted data independent acquisition proteomics analysis using Orbitrap mass spectrometers and DIA-Umpire

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-04-01 | MSV000080875 | MassIVE

Untargeted data independent acquisition proteomics analysis using Orbitrap mass spectrometers and DIA-Umpire

ORGANISM(S): Homo sapiens (Human)

2016-06-16 | PXD003179 | Pride

Human Dia Dia-umpire

DIA-Umpire: comprehensive computational framework for data independent acquisition proteomics

This dataset consists of 44 raw MS files, comprising 27 DIA (SWATH) and 15 DDA runs on a TripleTOF 5600 and of two raw mass spectrometry files acquired on a Q Exactive. The composition of the dataset is described in the manuscript by Tsou et al., titled: "DIA-Umpire: comprehensive computational fra...

ORGANISM(S): Homo sapiens (Human) Escherichia coli

2015-01-21 | PXD001587 | Pride

Swath Dia

DIA-Umpire: comprehensive computational framework for data independent acquisition proteomics

ORGANISM(S): Escherichia Coli (ncbitaxon:562) Homo Sapiens (ncbitaxon:9606)

2017-04-27 | MSV000081023 | MassIVE

Specter - Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics

These data cover all of the analyses described in the paper "Specter: linear deconvolution as a new paradigm for targeted analysis of data-independent acquisition mass spectrometry proteomics". Specifically, the data consist of - 20 DIA and DDA files from the HEK293T/synthetic phosphopeptides spike-...

ORGANISM(S): Homo sapiens (Human) Escherichia coli

2018-03-19 | PXD006722 | Pride

Proteomics Data-independent acquisition

Localization of Organelle Proteins Using Data-Independent Acquisition (DIA-LOP).

Not available

S-EPMC12455123 | biostudies-literature

Previous page
1 / 472
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 472
Next page

Sort by:

Relevance

Page size

4714 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

First Public Date

Modification

Study type

Release Date

Lab affiliation

OmicsDI is part of the ELIXIR infrastructure

Tweets