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The files in this archive examine six species within the genus Helicobacter to assay their histidine-rich proteins. They correspond to the manuscript "Expansion of nickel binding- and histidine-rich proteins during gastric adaptation of Helicobacter species" by Frederic Fischer, Egor Vorontsov, Eve...
ORGANISM(S): Helicobacter Felis (ncbitaxon:214) Helicobacter Bizzozeronii (ncbitaxon:56877) Helicobacter Pylori (ncbitaxon:210) Helicobacter Acinonychis (ncbitaxon:212) Helicobacter Mustelae (ncbitaxon:217) Helicobacter Hepaticus (ncbitaxon:32025) 
2022-03-23 | MSV000089106 | MassIVE
This a model from the article: A rabbit ventricular action potential model replicating cardiac dynamics at rapid heart rates. Mahajan A, Shiferaw Y, Sato D, Baher A, Olcese R, Xie LH, Yang MJ, Chen PS, Restrepo JG, Karma A, Garfinkel A, Qu Z, Weiss JN. Biophys J...
2005-01-01 | MODEL1006230048 | BioModels
The goal of our study is to build an integrated transcriptome landscape model for HER2 positive breast tumors and identify the crucial signaling pathways associated with HER2 tumors. Genomic features include, 685 genes that were differentially expressed only in HER2-positive tumors, 102 genes that w...
ORGANISM(S): Homo sapiens 
Bordetella pertussis, the etiological agent of whooping cough, regulates the expression of its virulence factors by the well-defined BvgA/S two-component regulatory system. Phosphorylated BvgA activates the virulence activated genes (vags) and represses via the activation of the bvgR gene the expres...
ORGANISM(S): Bordetella pertussis 
RNA polymerase III (RNAPIII) synthesizes a range of highly abundant small stable RNAs, principally pre-tRNAs. Here we report the genome-wide analysis of nascent transcripts attached to RNAPIII under permissive and restrictive growth conditions. This revealed strikingly uneven polymerase distribution...
ORGANISM(S): Saccharomyces cerevisiae 
MacNamara2012 - Signal transduction A toy model of signal tranduction to illustrate how different logic formalizms (Boolean, fuzzy logic and differential equations) treat state and time, is described here. This model was generated from the PKN-ToyPB.sif file available in...
2005-01-01 | MODEL1305240000 | BioModels
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