Davis M A MA - OmicsDI

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Unknown (3847)
Genomics (63)
Transcriptomics (37)
Proteomics (36)
Metabolomics (5)
Genomic (1)

Organisms

Homo sapiens (55)
Drosophila melanogaster (30)
Mus musculus (9)
Drosophila simulans (6)
Drosophila yakuba (5)
Drosophila pseudoobscura (4)
Glycine max (4)
Euphorbia esula (3)
Bos taurus (2)
Sus scrofa domesticus (2)
Xylella fastidiosa Temecula1 (1)
Populus x canadensis (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (1)
Zea mays (1)
Sus scrofa (1)
Arabidopsis thaliana (1)
Canis lupus familiaris (1)
Chlorocebus sabaeus (1)
Citrus sinensis (1)
Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2 (1)
Neocallimastigomycetes (1)
Ovis aries (1)
Rattus norvegicus (1)
Saccharomyces cerevisiae (1)
Sindbis virus (1)
Tursiops truncatus (1)
prokaryotic environmental samples (1)

Organisms

Populus x canadensis (1)

Repository

biostudies-arrayexpress (75)
pride (35)
EGA (24)
MetaboLights (5)
dbGaP (1)
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ENA (1)

Tissue

Liver (8)
Cell culture (6)
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Mammary gland epithelial cell (2)
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Adipose tissue (1)
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Eye (1)
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Disease

Large cell neuroendocrine carcinoma (1)
Melanoma (1)
Acute leukemia (1)
Alzheimer's disease (1)
Breast cancer (1)
Cardiovascular system disease (1)
Cervix carcinoma (1)
Glaucoma (1)
Obesity (1)
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Technology Type

Mass Spectrometry (35)
Shotgun proteomics (21)
Illumina 15K (8)
Bottom-up proteomics (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Mass spectrometry (4)
Data-dependent acquisition (3)
All-ion fragmentation (2)
Data-independent acquisition (2)
SRM/MRM (2)
Mass spectrometry assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - reverse phase (3)
NextSeq 500 (2)
Tandem Gas Chromatography MS - positive (2)
Q Exactive HF-X (1)
Gas Chromatography MS - (1)
Q Exactive (1)

Publication Date

2010 (27)
2011 (17)
2018 (7)
2021 (6)
2019 (6)
2014 (5)
2012 (5)
2025 (5)
2022 (4)
2005 (4)
2020 (4)
2016 (3)
2015 (3)
2026 (3)
2024 (3)
2013 (2)
2009 (2)
2006 (2)
2023 (2)
2008 (1)
2007 (1)
2004 (1)
2003 (1)
2002 (1)
2017 (1)

CHEBI ID

CHEBI:15756 (3)
CHEBI:16113 (3)
CHEBI:28733 (3)
CHEBI:72998 (3)
CHEBI:131924 (2)
CHEBI:131977 (2)
CHEBI:133456 (2)
CHEBI:145970 (2)
CHEBI:15428 (2)
CHEBI:15741 (2)
CHEBI:15843 (2)
CHEBI:15963 (2)
CHEBI:16196 (2)
CHEBI:16199 (2)
CHEBI:16737 (2)
CHEBI:17113 (2)
CHEBI:17151 (2)
CHEBI:17368 (2)
CHEBI:17490 (2)
CHEBI:17754 (2)
CHEBI:18012 (2)
CHEBI:18101 (2)
CHEBI:18186 (2)
CHEBI:18237 (2)
CHEBI:22470 (2)
CHEBI:22599 (2)
CHEBI:26271 (2)
CHEBI:26984 (2)
CHEBI:27570 (2)
CHEBI:27732 (2)

Metabolite Name

Xylose (2)
(1-butylheptyl)-Benzene (1)
(1-methyldecyl)-Benzene (1)
(1-methyldodecyl)-Benzene (1)
(E)-11-Octadecenoic acid (1)
(E)-2-Butenedioic acid (1)
(E)-9-Octadecenoic acid (1)
(R)-3-hydroxybutyrylcarnitine (1)
(R*,S*)-2,3-Dihydroxybutanoic acid (1)
(Z)-10-Heptadecenoic acid (1)
(Z)-13-Docosenamide (1)
(Z)-2-Dodecene (1)
(Z)-9-Octadecenamide (1)
(Z)-Docos-9-enenitrile (1)
(Z)-Oleic Acid (1)
1,2-Benzenedicarboxylic acid, bis(2-methylpropyl) ester (1)
1,2-Cyclohexanedicarboxylic acid, 2-methylpent-3-yl nonyl ester (1)
1,2-Cyclohexanedicarboxylic acid, nonyl 4-octyl ester (1)
1,2-Ethenediol (1)
1,3,7-trimethylurate (1)
1,3-dimethylurate (1)
1,4-Benzenedicarboxylic acid, dimethyl ester (1)
1,4-dimethoxy-Benzene (1)
1,5-Anhydroglucitol (1)
1,6-anhydroglucose (1)
1,7-dimethylurate (1)
1-((1-((1-Methoxypropan-2-yl)oxy)propan-2-yl)oxy)propan-2-ol (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2)* (1)

First Public Date

2014 (1)

Study type

ChIP-seq (38)
Transcription profiling by array (19)
Unknown experiment type (7)
RNA-seq of non coding RNA (4)
Other (2)
RNA-seq of coding RNA (2)
ChIP-chip by tiling array (1)
ChIP-chip by array (1)
Genotyping by array (1)

Release Date

2022 (415)
2023 (385)
2025 (374)
2021 (372)
2024 (364)
2020 (288)
2018 (266)
2019 (225)
2017 (185)
2015 (166)
2016 (165)
2014 (140)
2013 (105)
2011 (102)
2012 (95)
2010 (67)
2009 (52)
2026 (50)
2008 (37)
2007 (17)
2006 (16)
2005 (13)
2004 (9)
2003 (4)
2002 (3)
2000 (3)
1997 (2)
2001 (1)
1998 (1)

Lab affiliation

Department of Molecular and Cellular Biology, College of Biological Sciences, University of California, Davis, CA, 95616, USA (3)
Department of Biological Engineering, Koch Institute of Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA (2)
University of Missouri-Columbia (2)
1. University of Victoria Genome BC Proteomics Centre, University of Victoria, Victoria, British Columbia, Canada 2. Segal Cancer Proteomics Centre, Lady Davis Institute, Jewish General Hospital, McGill University, Montreal, Quebec, Canada 3. Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada 4. Gerald Bronfman Department of Oncology, Jewish General Hospital, Montreal, Quebec, Canada (1)
Chemical Sciences Division National Institute of Standards and Technology, USA (1)
Department of Biochemistry, University of Oxford, UK (1)
Department of Biology, University of Richmond, Richmond, VA (1)
Department of Clinical Pharmacy Practice, University of California, Irvine 92697, USA (1)
Department of Clinical Sciences, Cornell University, Ithaca, NY, USA Department of Surgical and Radiological Sciences, School of Veterinary Medicine, University of California-Davis, Davis, CA, USA (1)
Department of Food Science & Technology University of California, Davis Davis, CA, USA (1)
Department of Food Science and Technology University of California, Davis (1)
Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA (1)
Department of Nutritional Sciences and Toxicology University of California, Berkeley (1)
Department of Ophthalmology, Casey Eye Institute, Oregon Health & Science University, Portland, OR, USA (1)
Department of Plant Pathology University of California-Davis One Shield Avenue, Davis, CA 95616 (1)
Department of Plant Pathology, University of California, Davis (1)
Discovery Proteomics Laboratory, University of Oxford, UK (1)
Head of Discovery Proteomics Facility, Oxford (1)
Indiana University School of Medicine, Dept of Pediatrics; Herman B Wells Center for Pediatric Research (1)
Koch Institute for Integrative Cancer Research Center for Precision Cancer Medicine Department of Biological Engineering Massachusetts Institute of Technology, Cambridge, MA, USA (1)
La Trobe University, School of Psychological Science, Bundoora, Victoria, Australia (1)
Lab for Retinal Cell Biology Dept. Ophthalmology USZ / UZH University of Zurich (1)
Lady Davis Institue for Medical Research, McGill University, Canada Department of Medicine, McGill University, Canada (1)
Marine Biochemical Sciences Group Chemical Sciences Division Material Measurement Laboratory National Institute of Standards and Technology Hollings Marine Laboratory Charleston, South Carolina USA (1)
Massachusetts Institute of Technology (1)
Memorial Sloan Kettering Cancer Center (1)
Program in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA 01605, USA. (1)
Singapore Professor of Biological Engineering Professor of Biological Engineering Massachusetts Institute of Technology Department of Biological Engineering, 56-731 77 Massachusetts Ave. Cambridge, MA 02139 (1)
Smidt Heart Institute Cedars Sinai Medical Center (1)
University of California, Davis (1)

Tags

xref:PubMed:18721163 (1)

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A Metabolomic Approach for Predicting Diurnal Changes in Cortisol

INTRODUCTION: The dysregulation of cortisol secretion has been associated with a number of mental health and mood disorders. However, diagnostics for mental health and mood disorders are behavioral and lack biological contexts.

OBJECTIVES: The goal of this ...

2021-09-23 | MTBLS1206 | MetaboLights

Identification of pre-diagnostic lipid sets associated with liver cancer risk using untargeted lipidomics and chemical set analysis – a nested case-control study within the ATBC cohort

In pre-disposed individuals, a reprogramming of the hepatic lipid metabolism may support liver cancer initiation. We conducted a high-resolution mass spectrometry based untargeted lipidomics analysis of pre-diagnostic serum samples from a nested case-control study (219 liver cancer cases and 219 ...

2023-09-18 | MTBLS7776 | MetaboLights

Transcription profiling of Drosophila developmental time series

Michelle N. Arbeitman, Eileen E. M. Furlong, Farhad Imam, Eric Johnson, Brian H. Null, Bruce S. Baker, Mark A. Krasnow, Matthew P. Scott, Ronald W. Davis and Kevin P. White. Gene Expression During the Life Cycle of Drosophila melanogaster, Science, 297: 2270-2275, 2002. This work can be accessed fro...

ORGANISM(S): Drosophila melanogaster

2004-11-06 | E-FLYC-6 | biostudies-arrayexpress

Exometabolomic-enabled discovery of compounds associated with Escherichia coli O157:H7 population dynamics in the lettuce phyllosphere

Contamination of fresh produce with human pathogens remains a serious public health and economic concerns due to the absence of effective kill steps in the farm-to-fork chain. In particular, the pathogenic Escherichia coli O157:H7 has been implicated in multiple illness outbreaks linked to lettuc...

2026-06-11 | MTBLS14653 | MetaboLights

Preterm birth increases endogenous human milk peptide release compared to term birth

Hundreds of naturally occurring milk peptides have been found in term human milk. Whether there are differences between the levels of these peptides between term and preterm milk remains unknown. Premature milk is produced before complete maturation of the mammary gland and is under the influence of...

ORGANISM(S): Homo sapiens (Human)

2016-07-07 | PXD001079 | Pride

Peptidomics Human milk

Priming defense genes and metabolites in hybrid poplar by the green leaf volatile cis-3-hexenyl acetate

â€¢ Herbivore-induced plant volatiles (HIPVs), in addition to attracting natural enemies of herbivores, can serve a signaling function within plants by acting as wound signals that induce or prime defenses. However, particularly in woody plants, which compounds within HIPV blends are capable of act...

ORGANISM(S): Populus x canadensis

2010-05-25 | E-GEOD-11955 | biostudies-arrayexpress

Assessment of the prognostic and predictive utility of the Breast Cancer Index (BCI): an NCIC CTG MA.14 study.

Not available

S-EPMC4700696 | biostudies-literature

Artificial intelligence-based quantification of lymphocytes in feline small intestinal biopsies.

Not available

S-EPMC11874495 | biostudies-literature

A viral protein antibiotic inhibits lipid II flippase activity.

Not available

S-EPMC5764540 | biostudies-literature

The Use of Ginger Bioactive Compounds in Pregnancy: An Evidence Scan and Umbrella Review of Existing Meta-Analyses.