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ProteomicsA hybrid DDA/DIA-PASEF based assay library for a deep proteotyping of triple-negative breast cancer
Generation of a new library of targeted mass spectrometry assays for accurate protein quantification in triple negative breast cancer (TNBC) tissues. Primary tumor tissue lysates from 105 TNBC patients treated at Masaryk Memorial Cancer Institute (MMCI) in Brno, Czech Republic, were used to generate...
ORGANISM(S): Homo sapiens (Human) 
2024-05-31 | PXD047793 | Pride
Proteomics Mass spectrometry Data independent acquisition Assay library Triple-negative breast cancer 
ProteomicsDDA files of human cancer cells for the NCI-60 SWATH project PXD003539
This is the raw files for the DDA library used for intepreting the NCI-60 SWATH project PXD003539
ORGANISM(S): Homo sapiens (Human) 
2019-10-21 | PXD009597 | Pride
Cancer  shotgun  swath library  nci-60 
ProteomicsApplication of the HCC spectral library in DIA quantitation
This project stores the search results of MaxQuant2.0.3.0 of 162 HCC cell line raw files and 48 raw files for spectral library generation, and search results of DIA-NN version 1.8 and Spectronaut version15.2 of HepG2, HCCLM3 and TGFB1-stimulated HCCLM3.
ORGANISM(S): Homo sapiens (Human) 
2022-11-11 | PXD037159 | Pride
Hcc celllines hepg2 hcclm3 tgfb1 dia 
ProteomicsA large-scale assay library for targeted protein quantification in renal cell carcinoma tissues
Generation of a new library of targeted mass spectrometry assays for accurate protein quantification in malignant and normal kidney tissue. Aliquots of primary tumor tissue lysates from 86 patients with initially localized renal cell carcinoma (RCC), 75 patients with metastatic RCC treated with suni...
ORGANISM(S): Homo sapiens (Human) 
2022-01-03 | PXD028411 | Pride
Data independent acquisition Targeted proteomics Assay library Spectral library Renal cancer Selected reaction monitoring 
ProteomicsCavia porcellus spectral library
The guinea pig (cavia porcellus) is an excellent experimental model for translation to many aspects of human physiology and disease yet there is limited experimental information regarding its proteome. In an effort to overcome this gap in our knowledge, we generated a comprehensive spectral library ...
ORGANISM(S): Cavia Porcellus (ncbitaxon:10141) 
2018-12-07 | MSV000083199 | MassIVE
ProteomicsA new mass spectral library for high-coverage and reproducible analysis of the Plasmodium falciparum-infected red blood cell proteome
Background: Plasmodium falciparum causes the majority of malaria mortality worldwide, and the disease occurs during the asexual red blood cell (RBC) stage of infection. In the absence of an effective and available vaccine, and with increasing drug resistance, asexual RBC stage parasites are an impor...
ORGANISM(S): Homo sapiens (Human) Plasmodium falciparum 
2021-08-06 | PXD027241 | Pride
Malaria Dia Plasmodium falciparum Spectral library 
ProteomicsA new mass spectral library for high-coverage and reproducible analysis of the Plasmodium falciparum-infected red blood cell proteome
Background: Plasmodium falciparum causes the majority of malaria mortality worldwide, and the disease occurs during the asexual red blood cell (RBC) stage of infection. In the absence of an effective and available vaccine, and with increasing drug resistance, asexual RBC stage parasites are an impor...
ORGANISM(S): Homo sapiens (Human) Plasmodium falciparum 
2021-11-15 | PXD027301 | Pride
Plasmodium falciparum Malaria Dia Spectral library 
ProteomicsA gas phase fractionaction scheme integrating ion mobility for rapid diaPASEF library generation
Data independent acquisition (DIA or DIA/SWATH ) mass spectrometry has emerged as a primary measurement strategy in the field of quantitative proteomics. diaPASEF is a recent adaptation that leverages trapped ion mobility spectrometry (TIMS) to improve selectivity and increase sensitivity. The compl...
ORGANISM(S): Homo sapiens (Human) 
2022-08-12 | PXD034640 | Pride
Diapasef Dia Spectral library 
ProteomicsA gas phase fractionaction scheme integrating ion mobility for rapid diaPASEF library generation
Data independent acquisition (DIA or DIA/SWATH ) mass spectrometry has emerged as a primary measurement strategy in the field of quantitative proteomics. diaPASEF is a recent adaptation that leverages trapped ion mobility spectrometry (TIMS) to improve selectivity and increase sensitivity. The compl...
ORGANISM(S): Homo sapiens (Human) 
2023-08-18 | PXD039343 | Pride
Diapasef Dia Spectral library 
ProteomicsA comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS
A comprehensive and high-quality E. coli spectral assay library for 56,182 proteotypic peptides mapped to 4,014 (91.5%) of the 4,389 annotated proteins using one- and two-dimensional fractionated samples, and ion mobility separation.
ORGANISM(S): Escherichia coli 
2020-10-19 | PXD020785 | Pride
Spectral assay library E. coli Dda-ms 
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