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Transcriptomics (112)
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Homo sapiens (61)
Bartonella quintana JK 31 (30)
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Organisms

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Homo sapiens (1)

Repository

biostudies-arrayexpress (121)
pride (30)
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Tissue

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Disease

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Technology Type

Mass Spectrometry (30)
Shotgun proteomics (19)
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Mass spectrometry (2)
Top-down proteomics (2)
Data-dependent acquisition (2)
HumanOmni1 Quad BeadChip (1)
Immunopeptidomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (4)
Illumina HiSeq 2000 (3)
Illumina HiSeq 4000 (2)
Maxwell® AS2000 instrument (1)
BGISEQ-500 (1)
NextSeq 550 (1)
Q Exactive HF-X hybrid quadrupole-Orbitrap (1)
LTQ FT (1)
Shimadzu Nexera X2 UHPLC system, with attached PDA, coupled to Shimadzu 9030 QTOF mass spectrometer, standard ESI source (1)
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LTQ (1)
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LTQ Orbitrap Velos (1)
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Agilent 7890A GC-LECO Pegasus HT TOFMS (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)

Publication Date

2015 (19)
2014 (16)
2008 (16)
2013 (15)
2012 (14)
2010 (13)
2025 (8)
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2018 (7)
2016 (7)
2020 (5)
2011 (5)
2026 (4)
2021 (4)
2024 (3)
2019 (3)
2007 (3)
2009 (2)
2006 (1)
2017 (1)

CHEBI ID

CHEBI:37684 (2)
CHEBI:28757 (2)
CHEBI:18222 (2)
CHEBI:22653 (2)
CHEBI:26271 (2)
CHEBI:26986 (2)
CHEBI:24898 (2)
CHEBI:27266 (2)
CHEBI:28044 (2)
CHEBI:16811 (2)
CHEBI:25017 (2)
CHEBI:17822 (2)
CHEBI:17754 (2)
CHEBI:17992 (2)
CHEBI:33508 (2)
CHEBI:27897 (2)
CHEBI:32816 (2)
CHEBI:6650 (2)
CHEBI:15741 (2)
CHEBI:10213 (1)
CHEBI:133981 (1)
CHEBI:142218 (1)
CHEBI:75627 (1)
CHEBI:28243 (1)
CHEBI:10352 (1)
CHEBI:142219 (1)
CHEBI:47771 (1)
CHEBI:78410 (1)
CHEBI:31000 (1)
CHEBI:90452 (1)

Metabolite Name

Mannose (2)
Leucine (2)
Xylose (2)
Fructose (2)
Serine (2)
Valine (2)
Methionine (2)
Glycerol (2)
Glyceric acid (2)
Tryptophan (2)
Threonine (2)
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Phenylalanine (2)
Isoleucine (2)
Asparagine (2)
Sucrose (2)
Pyruvic acid (2)
Malic acid (2)
Succinic acid (2)
LysoPE(15:0) (1)
Monoacylglycerol(18:4) (1)
P-Hydroxybenzoic acid (1)
Trans-Urocanic acid (1)
Lanosterol (1)
Fucose (1)
LysoPE(16:0) (1)
Monopalmitin (1)
Monoolein (1)
LysoPE(18:0) (1)
Galactose (1)

IsPrivate

False (1)

First Public Date

2024 (1)
2022 (1)
2015 (1)
2013 (1)

Modelling Approach

Logical model (1)

Study type

Transcription profiling by array (74)
Comparative genomic hybridization by array (11)
RNA-seq of coding RNA (9)
ChIP-seq (6)
Other (3)
Methylation profiling by high throughput sequencing (3)
Genotyping by array (2)
Methylation profiling by array (2)
RNA-seq of coding RNA from single cells (2)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
Human - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
ChIP-chip by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
Single nucleus RNA sequencing (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (150)
2021 (131)
2023 (117)
2025 (105)
2020 (100)
2024 (98)
2019 (64)
2015 (55)
2014 (51)
2017 (50)
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2018 (48)
2012 (43)
2013 (34)
2026 (24)
2011 (24)
2010 (24)
2008 (19)
2009 (8)
2007 (8)
2006 (5)
2005 (5)
2004 (2)
2000 (2)
2001 (1)

Lab affiliation

(1) Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium; (2) VIB Center for Plant Systems Biology, B-9052 Ghent, Belgium. (2)
University of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Greifswald, Germany (2)
Department of Biochemistry&Molecular Biology, SUNY Upstate Medical University, Syracuse, NY, USA (1)
Proteomics Facility, Netherlands Cancer Institute, Amsterdam, Netherlands. & Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research, Utrecht Institute for Pharmaceutical Sciences, Utrecht University and Netherlands Proteomics Centre, Utrecht, The Netherlands. (1)
Dr. Andreas Otto Institute for Microbiology Department of Microbial Proteomics Ernst-Moritz-Arndt-University Greifswald F.-L.-Jahn-Str. 15 17489 Greifswald phone: +49 3834 4205920 fax: +49 3834 4205902 (1)
Uni Greifswald Hausdorffstrasse 8 17489 Greifswald (1)
Unidad de Biomedicina, Facultad de Estudios Superiores Iztacala, Universidad Nacional Autónoma de México. Av. de los Barrios 1, Col. Los Reyes Iztacala, CP 54090, Tlalnepantla de Baz, Edo. de México, México (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands; Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands; and Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore. (1)
Upstate Medical University, Department of Biochemistry and Molecular Biology (1)
Institute for Microbiology Department of Microbial Proteomics and Mass Spectrometry Ernst-Moritz-Arndt-University Greifswald F.-L.-Jahn-Str. 15 17489 Greifswald phone: ++49 3834 864073 ++49 3834 864072 (1)
Department of Biotechnology, Applied Sciences, Delft University of Technology, The Netherlands (1)
Institute for Microbiology Department of Microbial Proteomics Ernst-Moritz-Arndt-University Greifswald F.-L.-Jahn-Str. 15 17489 Greifswald phone: +49 3834 864073 fax: +49 3834 864202 (1)
Department of Biochemistry and Molecular Biology, SUNY Upstate Medical University, Syracuse, NY, USA (1)
Department of Medical Oncology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands. (1)
Head Proteomics Group , Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (1)
School of Biomedical and Healthcare Sciences Plymouth University Peninsula Schools of Medicine and Dentistry Plymouth University (UK) (1)
Center for RNA Research, Institute for Basic Science, Seoul 08826, Korea School of Biological Sciences, Seoul National University, Seoul 08826, Korea (1)
Institute of Microbiology, University of Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada (1)
Head Proteomics Group, Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (1)
BMBB, University of Minnesota, USA (1)
Department of Microbial Proteomics, Institute of Microbiology, University of Greifswald, Greifswald, Germany (1)
Assistant professor, School of Biological Sciences, Seoul National University (1)
EDyP (1)
Head Proteomics Group Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (1)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Faculty of Science (1)
University of Ottawa (1)

Tags

xref:EuropePMC:PMC10285083 (1)
xref:EuropePMC:PMC9534479 (1)
xref:PubMed:26173112 (1)
xref:PubMed:30739914 (1)

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Disease-specific expression of host genes during downy mildew infection of Arabidopsis

Here we report on the identification of Arabidopsis genes that are induced during compatible but not during incompatible interactions with the downy mildew pathogen Hyaloperonospora arabidopsidis. This set of so-called compatible specific (CS) genes contrasts the large group of defence-associated ge...

ORGANISM(S): Arabidopsis thaliana

2010-05-18 | E-GEOD-14946 | biostudies-arrayexpress

Psychometric Properties of the 11-Item De Jong Gierveld Loneliness Scale in a Representative Sample of Mexican Older Adults.

Not available

S-EPMC9957099 | biostudies-literature

The response of Streptococcus pneumoniae to replication stress on the transcriptome of a wild-type strain

The aim of this study is to identify the response of S. pneumoniae to HPUra-induced replication stress on transcriptional level in a wild type strain. Two cultures were compared to each other. One treated with HPUra and one untreated. A dye-swap was included, and both the dye-swap and original label...

ORGANISM(S): Streptococcus pneumoniae D39

2013-04-23 | E-GEOD-46002 | biostudies-arrayexpress

NCIC CTG MA.22 phase I/II trial of epirubicin and docetaxel in locally advanced breast cancer on 2-weekly or 3-weekly schedules

This phase I/II neoadjuvant trial determined maximally-tolerated doses (MTD), dose-limiting toxicities (DLT), response-to-therapy, and explored the role of new response biomarkers. The combination regimens were delivered with acceptable toxicity, good clinical response, inducing changes in tumor RNA...

ORGANISM(S): Homo sapiens

2015-11-11 | E-GEOD-66999 | biostudies-arrayexpress

Transcriptional response upon deletion of parB in Streptococcus pneumoniae D39

The aim of the microarray experiment was to unravel the difference in gene expression between Strepcoccus pneumoniae wild-type and a strain in which parB is deleted. Two biological replicates and a dye-swap was included. The slide configuration also contained 3 replicate spots for each gene. This ma...

ORGANISM(S): Streptococcus pneumoniae D39

2015-07-06 | E-MTAB-3300 | biostudies-arrayexpress

G-Quadruplex DNA as a Target in Pathogenic Bacteria: Efficacy of an Extended Naphthalene Diimide Ligand and Its Mode of Action.

Not available

S-EPMC8958502 | biostudies-literature

Using Integrated City Data and Machine Learning to Identify and Intervene Early on Housing-Related Public Health Problems.

Not available

S-EPMC8781224 | biostudies-literature

Supporting information for tryptic EPO glycopeptide LC-MS analysis via cysteine aminoethylation

Supplementary information for a technical note describing the application of cysteine aminoethylation for the site-specific glycosylation analysis of recombinant human EPO using trypsin as sole protease.

ORGANISM(S): Cho Cells

2020-04-21 | MSV000085318 | MassIVE

S_N2 versus S_N2' Competition.

Not available

S-EPMC9295157 | biostudies-literature

Temperature-dependent transcriptional response under anaerobic C and N limitations in Yeast

The global transcriptional response of Saccharomyces cerevisiae was investigated in low temperature chemostat cultures grown in carbon or nitrogen limitation. During steady state chemostats, the growth rates and in vivo fluxes were kept constant however the growth-limiting nutrient was significantly...

ORGANISM(S): Saccharomyces cerevisiae

2007-01-20 | E-GEOD-6190 | biostudies-arrayexpress

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