Dean B B - OmicsDI

Show results for

Unknown (1232)
Transcriptomics (121)
Proteomics (41)
Genomics (25)
Metabolomics (9)
Genomic (2)

Organisms

Homo sapiens (62)
Mus musculus (60)
Arabidopsis thaliana (15)
Pinus sylvestris (2)
Zea mays (2)
Bacteria (2)
Burkholderia cenocepacia (2)
Lactobacillus acidophilus NCFM (2)
Saccharomyces cerevisiae (2)
Pinus taeda (1)
Aspergillus flavus (1)
Pinus pinaster (1)
Macaca mulatta (1)
Anopheles gambiae (1)
Mycobacterium tuberculosis H37Rv (1)
Triticum aestivum (1)
Sus scrofa (1)
Drosophila melanogaster (1)
Blumeria hordei (1)
Hordeum vulgare (1)
Plasmodium (1)
219334 (1)
Aedes aegypti (1)
Ananas comosus (1)
Limosilactobacillus reuteri subsp. reuteri (1)
Mycobacterium marinum M (1)
Myodes glareolus (1)
Schizosaccharomyces pombe (1)
Schizosaccharomyces pombe 927 (1)
Sorghum bicolor (1)

Organisms

Mus musculus (4)
Bacillus cereus AH1134 (1)
Orbicella faveolata (1)
Penaeus vannamei (1)

Repository

biostudies-arrayexpress (132)
pride (33)
ENA (11)
MetaboLights (8)
MassIVE (7)
dbGaP (2)
EGA (2)
geo (1)
GNPS (1)
jPOST (1)

Tissue

Cell culture (8)
Seedling (5)
Leaf (3)
B cell (2)
Hepatocyte (2)
Blood (1)
Culture fluid (1)
Dendritic cell (1)
Early embryonic cell (1)
Epithelial cell (1)
Esophagus (1)
Esophagus mucosa (1)
Fibroblast (1)
Heart (1)
Kidney (1)
Liver (1)
Monocyte (1)
Ovary (1)
Permanent cell line cell (1)
Plant cell (1)
Primary cell (1)
Root (1)
Seminal vesicle fluid (1)
Skeletal muscle (1)
Skin (1)
Sperm (1)
T cell (1)

Disease

Acute myeloid leukemia (3)
Cystic fibrosis (2)
Down syndrome, acute megakaryoblastic leukaemia (1)
Normal (1)
Chronic myeloid leukemia (1)
Colorectal cancer (1)
Esophageal cancer (1)
Esophagus adenocarcinoma (1)
Hepatocellular carcinoma (1)
Ovary adenocarcinoma (1)
Skin melanoma (1)

Technology Type

Mass Spectrometry (33)
Shotgun proteomics (16)
Data-dependent acquisition (10)
Bottom-up proteomics (9)
Mass spectrometry (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Mass spectrometry assay (2)
Data-independent acquisition (1)
Gel-based experiment (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (5)
Exactive (Thermo Scientific) (5)
Illumina HiSeq 4000 (4)
Illumina HiSeq 2500 (3)
Illumina HiSeq 2000 (2)
Orbitrap Fusion Lumos (2)
Q Exactive (2)
Q Exactive Plus (2)
Basic laboratory equipment (1)
NA (1)
NextSeq 500 (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos (1)
Flow Injection Analysis MS - Alternating (FIA-MS (Alternating)) (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - negative - reverse phase - Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - positive - HILIC - Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - positive - reverse-phase (1)

Publication Date

2010 (21)
2014 (16)
2015 (15)
2011 (13)
2012 (12)
2008 (12)
2025 (12)
2013 (11)
2023 (9)
2016 (9)
2022 (8)
2007 (7)
2020 (5)
2024 (5)
2017 (5)
2026 (4)
2009 (4)
2018 (4)
2019 (4)
2006 (2)
2005 (1)
2004 (1)
2003 (1)

CHEBI ID

CHEBI:18095 (3)
CHEBI:15584 (2)
CHEBI:15603 (2)
CHEBI:15727 (2)
CHEBI:15729 (2)
CHEBI:15891 (2)
CHEBI:15966 (2)
CHEBI:15971 (2)
CHEBI:16015 (2)
CHEBI:16176 (2)
CHEBI:16283 (2)
CHEBI:16349 (2)
CHEBI:16467 (2)
CHEBI:1670 (2)
CHEBI:16737 (2)
CHEBI:16831 (2)
CHEBI:17061 (2)
CHEBI:17126 (2)
CHEBI:17148 (2)
CHEBI:17191 (2)
CHEBI:17368 (2)
CHEBI:17405 (2)
CHEBI:18050 (2)
CHEBI:18089 (2)
CHEBI:18295 (2)
CHEBI:28790 (2)
CHEBI:28865 (2)
CHEBI:30769 (2)
CHEBI:30887 (2)
CHEBI:30913 (2)

Metabolite Name

4-Pyridoxic acid (2)
Citric acid (2)
D-Glutamine (2)
Hippuric acid (2)
L-Cystine (2)
L-Glutamine (2)
L-Histidine (2)
Taurocholic acid (2)
()-(E)-13-Hydroxy-10-oxo-11-octadecenoic acid (1)
()-1516-Dihydroxyoctadecanoic acid (1)
()-Quebrachidine (1)
(-)-11-Hydroxy-91516-trioxooctadecanoic acid (1)
(-)-Ethyl 3-acetoxy-2-methylbutyrate (1)
(-)-Farnesiferol C (1)
(-)-Matairesinol (1)
(-)-Methyl 5-acetoxyhexanoate (1)
(-)-erythro-Anethole glycol 1-glucoside (1)
(-)-erythro-Anethole glycol 2-glucoside (1)
(10betaH11xi)-11-Hydroxy-13-nor-6-eremophilen-8-one (1)
(1R)-Nepetalic acid (1)
(1R2R)-Isocitric acid (1)
(1R3R4R5S6S8x)-1-Acetoxy-8-angeloyloxy-34-epoxy-5-hydroxy-7(14)10-bisaboladien-2-one (1)
(1R3S4S6R)-69-Dihydroxyfenchone 6-O-b-D-glucoside (1)
(1R4R5S)-5-Hydroxyfenchone glucoside (1)
(1R4S6R)-6-Hydroxyfenchone glucoside (1)
(1S3R4R)-810-Dihydroxyfenchone 10-O-b-D-glucoside (1)
(1S4R)-10-Hydroxyfenchone glucoside (1)
(2E4Z8E)-Colneleic acid (1)
(2R)-1-O-beta-D-Galactopyranosylglycerol (1)
(3a5b)-24-oxo-24-(2-sulfoethyl)aminocholan-3-yl-b-D-Glucopyranosiduronic acid (1)

First Public Date

2024 (4)
2021 (2)
2014 (2)
2023 (1)
2018 (1)
2013 (1)

Classification

bacteria (1)

Modification

4x(2)H labeled dimethylated L-lysine (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (78)
RNA-seq of coding RNA (12)
Unknown experiment type (7)
ChIP-seq (7)
Comparative genomic hybridization by array (4)
RNA-seq of coding RNA from single cells (4)
Methylation profiling by high throughput sequencing (4)
Transcription profiling by SAGE (3)
ChIP-chip by tiling array (3)
Other (2)
MicroRNA profiling by array (2)
Human - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
MicroRNA profiling by high throughput sequencing (1)
DNA-seq (1)
Methylation profiling by array (1)

Release Date

2021 (146)
2022 (144)
2023 (130)
2025 (119)
2024 (116)
2020 (100)
2019 (95)
2015 (72)
2018 (69)
2017 (59)
2016 (53)
2014 (46)
2010 (34)
2012 (32)
2011 (31)
2013 (30)
2008 (19)
2026 (17)
2009 (12)
2007 (12)
2006 (8)
2005 (7)
2003 (3)
2001 (3)
2004 (2)
2000 (2)
1999 (1)
1998 (1)

Lab affiliation

Associate Professor, Head of Biochemistry, School of Biomolecular and Biomedical Science, Associate Dean for Widening Participation, College of Science Conway Institute room F059 University College Dublin +353 1 716 6723 (1)
Biochemistry and Pharmacology, MDHS Associate Dean of Graduate Research Bio21 Institute The University of Melbourne, Victoria 3010 Australia (1)
Calico Life Sciences (1)
Center for Bio/Molecular Science & Engineering (Code 6900), US Naval Research Laboratory, Washington DC, USA (1)
Center of Allergy and Environment (ZAUM), Technical University of Munich and Helmholtz Center Munich, 80802 Munich, Germany Department of Immunobiology, Université de Lausanne, 1066 Epalinges, Switzerland (1)
David O. Morgan PhD Professor, Department of Physiology Vice Dean for Research, School of Medicine University of California, San Francisco Genentech Hall Room N312B 600 16th Street San Francisco CA 94143 415-476-6695 (1)
Dean: Faculty of Agriculture and Natural Sciences (FANS) | University of Mpumalanga South Africa (1)
Department of Immunology, University of Pittsburgh (1)
Department of Microbiology and Immunology, Michigan Medicine, University of Michigan, Ann Arbor, MI 48109, USA (1)
Dept. of Cellular & Molecular Physiology Institute of Translational Medicine University of Liverpool Crown Street Liverpool L69 3BX (1)
Group Leader Cell & Developmental Biology John Innes Centre (1)
Group Leader Department Cell and Developmental Biology John Innes Centre Norwich, UK (1)
Group leader Cell and Developmental Biology John Innes Centre Norwich Research Park Norwich, UK (1)
Group leader Department Biochemistry and Metabolism John Innes Centre JIC Norwich Reseach Park Norwich, UK (1)
Institute for Systems Biology, Seattle, WA, USA (1)
Institute of Translational Medicine University of Liverpool Crown Street Liverpool L69 3BX (1)
John Innes Centre Norwich Research Park Norwich NR4 7UH, UK (1)
Laboratório Especial de Toxinologia Aplicada, Instituto Butantan,Av. Vital Brasil 1500, 05503-000, São Paulo, Brazil. (1)
Louise B. McGavock Professor Department of Cell and Developmental Biology Senior Associate Dean for Biomedical Research, Education and Training Vanderbilt University School of Medicine (1)
Louise B. McGavock Professor Department of Cell and Developmental Biology Senior Associate Dean for Biomedical Research, Education and Career Development. Vanderbilt University School of Medicine (1)
Mammalian Behaviour and Evolution Group, Institute of Integrative Biology, University of Liverpool, Leahurst Campus, Chester High Road, Neston CH64 7TE, UK (1)
Mark R. Chance, Ph.D. Vice Dean for Research Charles W. and Iona A. Mathias Professor of Cancer Research Director, Center for Proteomics and Bioinformatics School of Medicine Case Western Reserve University 930 BRB, 10900 Euclid Ave. Cleveland OH 44106 (1)
Naval Research Laboratory (1)
Professor of Biology, Center for Genomics and Systems Biology Vice Dean, Graduate School of Arts and Sciences New York University, 12 Waverly Pl, New York, Ny 10003 (1)
Professor, School of Life Sciences, The Chinese University of Hong Kong Director, Centre for Protein Science and Crystallography Assistant Dean (Student Affairs), Faculty of Sciences Fellow, Shaw College (1)
Research Professor Cell and Developmental Biology John Innes Centre Norwich Research Park Norwich, UK (1)
Siobhán McClean, PhD, PDip Associate Professor, Head of Biochemistry, School of Biomolecular and Biomedical Science, Associate Dean for Widening Participation, College of Science Conway Institute room F059 University College Dublin +353 1 716 6723 (1)
Target Discovery Institute, Nuffield Dept Medicine, University of Oxford, UK (1)
The Institute of Cancer Research (1)
University of Arizona Professor Emerita, Department of Nutritional Science Associate Dean, Bart Cardon Career and Academic Services (1)

Previous page
1 / 143
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 143
Next page

Sort by:

Relevance

Page size

MaHPIC Experiment HuC - Metabolomics of plasma samples from human volunteers infected with Plasmodium vivax

Project Description:
The Malaria Host-Pathogen Interaction Center (MaHPIC) is a transdisciplinary malaria systems biology research program initially supported by an NIH/NIAID contract (HHSN272201200031C, 2012-2017; see http://w...

2018-06-19 | MTBLS665 | MetaboLights

OCA-B/Pou2af1 promotes autoimmune demyelination through control of stem-like CD4+ T cells [Bulk RNAseq]

PRJNA1019708 | ENA

OCA-B/Pou2af1 promotes autoimmune demyelination through control of stem-like CD4+ T cells [Remission scRNAseq]

PRJNA1019709 | ENA

OCA-B/Pou2af1 promotes autoimmune demyelination through control of stem-like CD4+ T cells [Relapse scRNAseq]

PRJNA1019707 | ENA

MaHPIC Experiment HuB - Metabolomics analysis of human plasma from patients infected with Plasmodium falciparum and P.vivax for discovery of diagnostic markers of malaria

MaHPIC Experimental Description:
This study is based on archived plasma from samples collected between 2011 and 2014. Patients in Thailand who were infected with Plasmodium falciparum (30 subjects), P. vivax (30 subjects), co-infected with P. falciparum and P. viv...

2018-09-05 | MTBLS664 | MetaboLights

Dual dean entrainment with volume ratio modulation for efficient droplet co-encapsulation: extreme single-cell indexing.

Not available

S-EPMC8383763 | biostudies-literature

Oct1 and OCA-B are Selectively Required for CD4 Memory T Cell Formation and Function (ChIP-seq)

Epigenetic changes are crucial for the generation of immunological memory. Failure to generate or maintain these changes will result in poor memory responses. Similarly, augmenting or stabilizing the correct epigenetic states offers a potential method of enhancing immune memory. Yet the transcriptio...

ORGANISM(S): Mus musculus

2015-09-17 | E-GEOD-65918 | biostudies-arrayexpress

Phosphate-binding pocket on cyclin B governs CDK substrate phosphorylation and mitotic timing

Cell cycle progression is governed by complexes of the cyclin-dependent kinases (CDKs) and their regulatory subunits cyclin and Cks1. CDKs phosphorylate hundreds of substrates, often at multiple sites. Multisite phosphorylation depends on Cks1, which binds initial priming phosphorylation sites to pr...

ORGANISM(S): Saccharomyces cerevisiae Saccharomyces cerevisiae (Baker's yeast)

2025-05-19 | PXD062428 | Pride

Allospecific Memory B Cell Responses Are Dependent on Autophagy.

Not available

S-EPMC5732898 | biostudies-literature

Changes in Medicare Part B Spending for Biologic Drugs After Biosimilar Entry Into the Market.

Not available

S-EPMC8796923 | biostudies-literature

Previous page
1 / 143
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 143
Next page

Sort by:

Relevance

Page size

1430 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

CHEBI ID

Metabolite Name

First Public Date

Classification

Modification

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets