Dean M M - OmicsDI

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Unknown (2119)
Transcriptomics (78)
Proteomics (59)
Genomics (22)
Metabolomics (9)

Organisms

Homo sapiens (51)
Mus musculus (49)
Arabidopsis thaliana (12)
Pinus sylvestris (2)
Drosophila melanogaster (2)
Bacteria (2)
Burkholderia cenocepacia (2)
Saccharomyces cerevisiae (2)
Schizosaccharomyces pombe 927 (2)
Pinus taeda (1)
Macaca mulatta (1)
Zea mays (1)
Oncorhynchus mykiss (1)
Oryza sativa Japonica Group (1)
Triticum aestivum (1)
Plasmodium (1)
Mycobacterium tuberculosis (1)
Aedes aegypti (1)
Amphibalanus amphitrite (1)
Ananas comosus (1)
Mycobacterium marinum M (1)
Mycobacterium tuberculosis H37Rv (1)
Myodes glareolus (1)
Pyricularia oryzae (1)
Schizosaccharomyces pombe (1)
Sorghum bicolor (1)
Trypanosoma brucei (1)

Organisms

Homo sapiens (3)
Orbicella faveolata (2)
Penaeus vannamei (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (90)
pride (47)
MassIVE (8)
MetaboLights (8)
ENA (8)
jPOST (3)
EGA (2)
GNPS (1)
PanoramaPublic (1)

Tissue

Cell culture (10)
Seedling (5)
Blood (4)
Blood cell (3)
Hepatocyte (3)
Leaf (3)
B cell (2)
Liver (2)
Accessory sex gland (1)
Cerebrospinal fluid (1)
Conidium (1)
Culture fluid (1)
Dendritic cell (1)
Early embryonic cell (1)
Ejaculatory duct (1)
Epiphyseal growth plate (1)
Epithelial cell (1)
Esophagus (1)
Esophagus mucosa (1)
Fibroblast (1)
Heart (1)
Hypertrophic chondrocyte (1)
Internal female genital organ (1)
Intervertebral disc (1)
Kidney (1)
Lung (1)
Lung elastic tissue (1)
Male reproductive gland (1)
Monocyte (1)
T cell (1)

Disease

Chronic myeloid leukemia (4)
Acute myeloid leukemia (2)
Cystic fibrosis (2)
Down syndrome, acute megakaryoblastic leukaemia (1)
Colorectal cancer (1)
Esophageal cancer (1)
Esophagus adenocarcinoma (1)
Hepatocellular carcinoma (1)
Melanoma (1)
Mucopolysaccharidosis Ih/s (1)
Ovary adenocarcinoma (1)
Schmid metaphyseal chondrodysplasia (1)
Scoliosis (1)
Skin melanoma (1)

Technology Type

Mass Spectrometry (47)
Shotgun proteomics (26)
Bottom-up proteomics (12)
Data-dependent acquisition (11)
Mass spectrometry (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Mass spectrometry assay (2)
Data-independent acquisition (2)
Gel-based experiment (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (6)
Exactive (Thermo Scientific) (5)
Orbitrap Fusion Lumos (2)
Q Exactive (2)
Q Exactive Plus (2)
Basic laboratory equipment (1)
NA (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos (1)
Q Exactive HF (1)
Flow Injection Analysis MS - Alternating (FIA-MS (Alternating)) (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - negative - reverse phase - Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - positive - HILIC - Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - positive - reverse-phase (1)

Publication Date

2010 (17)
2025 (14)
2022 (11)
2015 (11)
2014 (11)
2016 (10)
2013 (9)
2011 (9)
2024 (8)
2023 (7)
2008 (6)
2007 (6)
2017 (6)
2026 (5)
2012 (5)
2018 (5)
2019 (5)
2020 (3)
2009 (2)
2004 (2)
2021 (2)
2006 (1)
2005 (1)

CHEBI ID

CHEBI:18095 (3)
CHEBI:15584 (2)
CHEBI:15603 (2)
CHEBI:15727 (2)
CHEBI:15729 (2)
CHEBI:15891 (2)
CHEBI:15966 (2)
CHEBI:15971 (2)
CHEBI:16015 (2)
CHEBI:16176 (2)
CHEBI:16283 (2)
CHEBI:16349 (2)
CHEBI:16467 (2)
CHEBI:1670 (2)
CHEBI:16737 (2)
CHEBI:16831 (2)
CHEBI:17061 (2)
CHEBI:17126 (2)
CHEBI:17148 (2)
CHEBI:17191 (2)
CHEBI:17368 (2)
CHEBI:17405 (2)
CHEBI:18050 (2)
CHEBI:18089 (2)
CHEBI:18295 (2)
CHEBI:28790 (2)
CHEBI:28865 (2)
CHEBI:30769 (2)
CHEBI:30887 (2)
CHEBI:30913 (2)

Metabolite Name

4-Pyridoxic acid (2)
Citric acid (2)
D-Glutamine (2)
Hippuric acid (2)
L-Cystine (2)
L-Glutamine (2)
L-Histidine (2)
Taurocholic acid (2)
()-(E)-13-Hydroxy-10-oxo-11-octadecenoic acid (1)
()-1516-Dihydroxyoctadecanoic acid (1)
()-Quebrachidine (1)
(-)-11-Hydroxy-91516-trioxooctadecanoic acid (1)
(-)-Ethyl 3-acetoxy-2-methylbutyrate (1)
(-)-Farnesiferol C (1)
(-)-Matairesinol (1)
(-)-Methyl 5-acetoxyhexanoate (1)
(-)-erythro-Anethole glycol 1-glucoside (1)
(-)-erythro-Anethole glycol 2-glucoside (1)
(10betaH11xi)-11-Hydroxy-13-nor-6-eremophilen-8-one (1)
(1R)-Nepetalic acid (1)
(1R2R)-Isocitric acid (1)
(1R3R4R5S6S8x)-1-Acetoxy-8-angeloyloxy-34-epoxy-5-hydroxy-7(14)10-bisaboladien-2-one (1)
(1R3S4S6R)-69-Dihydroxyfenchone 6-O-b-D-glucoside (1)
(1R4R5S)-5-Hydroxyfenchone glucoside (1)
(1R4S6R)-6-Hydroxyfenchone glucoside (1)
(1S3R4R)-810-Dihydroxyfenchone 10-O-b-D-glucoside (1)
(1S4R)-10-Hydroxyfenchone glucoside (1)
(2E4Z8E)-Colneleic acid (1)
(2R)-1-O-beta-D-Galactopyranosylglycerol (1)
(3a5b)-24-oxo-24-(2-sulfoethyl)aminocholan-3-yl-b-D-Glucopyranosiduronic acid (1)

First Public Date

2014 (6)
2023 (1)
2013 (1)

Modification

4x(2)H labeled dimethylated L-lysine (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (44)
RNA-seq of coding RNA (8)
ChIP-seq (6)
RNA-seq of coding RNA from single cells (5)
Methylation profiling by high throughput sequencing (5)
Comparative genomic hybridization by array (4)
Transcription profiling by SAGE (3)
Unknown experiment type (3)
ChIP-chip by tiling array (3)
Other (2)
MicroRNA profiling by array (2)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
DNA-seq (1)
Methylation profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2022 (247)
2021 (229)
2023 (227)
2024 (215)
2025 (205)
2020 (179)
2019 (148)
2018 (144)
2017 (107)
2016 (88)
2015 (85)
2014 (55)
2013 (48)
2011 (42)
2010 (36)
2012 (31)
2026 (30)
2009 (22)
2007 (17)
2006 (13)
2008 (12)
2005 (11)
2004 (5)
2001 (5)
2000 (3)
2003 (2)
2002 (2)
1998 (1)

Lab affiliation

Vice Dean, Faculty of Medical and Human Sciences Section Lead, Infrastructure and Technology, Manchester Academic Health Science Centre University of Manchester Wolfson Molecular Imaging Centre Manchester M20 3LJ (4)
Ph.D., Professor, Vice Dean (2)
The Institute of Cancer Research (2)
Associate Professor, Head of Biochemistry, School of Biomolecular and Biomedical Science, Associate Dean for Widening Participation, College of Science Conway Institute room F059 University College Dublin +353 1 716 6723 (1)
Biochemistry and Pharmacology, MDHS Associate Dean of Graduate Research Bio21 Institute The University of Melbourne, Victoria 3010 Australia (1)
Calico Life Sciences (1)
Center of Allergy and Environment (ZAUM), Technical University of Munich and Helmholtz Center Munich, 80802 Munich, Germany Department of Immunobiology, Université de Lausanne, 1066 Epalinges, Switzerland (1)
David O. Morgan PhD Professor, Department of Physiology Vice Dean for Research, School of Medicine University of California, San Francisco Genentech Hall Room N312B 600 16th Street San Francisco CA 94143 415-476-6695 (1)
Dean: Faculty of Agriculture and Natural Sciences (FANS) | University of Mpumalanga South Africa (1)
Department of Immunology, University of Pittsburgh (1)
Department of Microbiology and Immunology, Michigan Medicine, University of Michigan, Ann Arbor, MI 48109, USA (1)
Department of Pathology and Immunology, Baylor College of Medicine, Houston, TX 77030 (1)
Dept. of Cellular & Molecular Physiology Institute of Translational Medicine University of Liverpool Crown Street Liverpool L69 3BX (1)
Director at the Center for Integrated Fungal Research (CIFR), North Carolina State University (NCSU), USA (1)
Edward Grey Institute, Department of Zoology, University of Oxford, Oxford, UK (1)
Group Leader Cell & Developmental Biology John Innes Centre (1)
Group Leader Department Cell and Developmental Biology John Innes Centre Norwich, UK (1)
Group leader Cell and Developmental Biology John Innes Centre Norwich Research Park Norwich, UK (1)
Group leader Department Biochemistry and Metabolism John Innes Centre JIC Norwich Reseach Park Norwich, UK (1)
Institute for Systems Biology, Seattle, WA, USA (1)
Institute of Neuroscience and Physiology Section of psychiatry and neurochemistry University of Gothenburg (1)
Institute of Translational Medicine University of Liverpool Crown Street Liverpool L69 3BX (1)
Interim Dean Life Sciences Office, School of Life Sciences, University of Dundee (1)
John Innes Centre Norwich Research Park Norwich NR4 7UH, UK (1)
Laboratório Especial de Toxinologia Aplicada, Instituto Butantan,Av. Vital Brasil 1500, 05503-000, São Paulo, Brazil. (1)
Louise B. McGavock Professor Department of Cell and Developmental Biology Senior Associate Dean for Biomedical Research, Education and Training Vanderbilt University School of Medicine (1)
Louise B. McGavock Professor Department of Cell and Developmental Biology Senior Associate Dean for Biomedical Research, Education and Career Development. Vanderbilt University School of Medicine (1)
Mark R. Chance, Ph.D. Vice Dean for Research Charles W. and Iona A. Mathias Professor of Cancer Research Director, Center for Proteomics and Bioinformatics School of Medicine Case Western Reserve University 930 BRB, 10900 Euclid Ave. Cleveland OH 44106 (1)
Naval Research Laboratory (1)
Professor and Assistant Dean (1)

Tags

xref:PubMed:20149089 (2)
xref:PubMed:26246472 (2)
xref:PubMed:18662989 (1)
xref:PubMed:20514017 (1)

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Proteomics analysis of mycobacterium marinum culture filtrate

Mycobacterium marinum is a pathogenic bacterium that causes infections in both fish and humans. The PE/PPE protein family is unique to mycobacteria and has been implicated in various aspects of mycobacterial pathogenicity. Understanding the presence and potential function of these proteins in M. mar...

ORGANISM(S): Mycobacterium marinum (strain ATCC BAA-535 / M)

2025-05-13 | PXD050612 | Pride

Widespread over-expression of the X chromosome in sterile F1 hybrid mice

We used a reciprocal cross of Mus musculus and M. domesticus in which F1 males are sterile in one direction and fertile in the other direction, in order to associate expression differences with sterility. Four different crosses were performed. A cross between two strains within each mouse species (M...

ORGANISM(S): Mus musculus musculus x M. m. domesticus

2010-10-05 | E-GEOD-17684 | biostudies-arrayexpress

Dean migration mechanisms: facilitating the control of microbial contaminants in cell therapy product manufacturing.

Not available

S-EPMC12835003 | biostudies-literature

Transcriptome profiling of the rice blast fungus during invasive plant infection and in vitro stresses

Rice blast is the most threatening disease to cultivated rice worldwide. Magnaporthe oryzae, its causal agent is likely to encounter environmental challenges during invasive growth in the host plants that require shifts in gene expression to establish a compatible interaction. Here, we tested the hy...

ORGANISM(S): Magnaporthe oryzae

2011-01-24 | E-GEOD-21908 | biostudies-arrayexpress

Use of antigen-specific interleukin-2 to differentiate between cattle vaccinated with Mycobacterium bovis BCG and cattle infected with M. bovis.

Not available

S-EPMC3910917 | biostudies-literature

The Ser/Thr Protein Kinase Protein-Protein Interaction Map of M. tuberculosis

Mycobacterium tuberculosis (Mtb) is the causative agent of tuberculosis, the leading cause of death among all infectious diseases. There are 11 eukaryotic-like serine/threonine protein kinases (STPKs) in Mtb, which are thought to play pivotal roles in cell growth, signal transduction and pathogenesi...

ORGANISM(S): Mycobacterium tuberculosis H37Rv

2017-06-06 | PXD006389 | Pride

Protein-protein interaction Cell wall Murc Ser/thr protein kinase

Dean-Flow Affected Lateral Focusing and Separation of Particles and Cells in Periodically Inhomogeneous Microfluidic Channels.

Not available

S-EPMC9865988 | biostudies-literature

First-in-Human Pharmacokinetic and Pharmacodynamic Study of the Dual m-TORC 1/2 Inhibitor AZD2014.

Not available

S-EPMC4512239 | biostudies-literature

MaHPIC Experiment HuC - Metabolomics of plasma samples from human volunteers infected with Plasmodium vivax

Project Description:
The Malaria Host-Pathogen Interaction Center (MaHPIC) is a transdisciplinary malaria systems biology research program initially supported by an NIH/NIAID contract (HHSN272201200031C, 2012-2017; see http://w...

2018-06-19 | MTBLS665 | MetaboLights

Gene Expression in the Rice Blast Fungus, Magnaporthe grisea, During Nitrogen Starvation

This experiment was designed to analyze transcriptional changes that occur when the fungal plant pathogen M. grisea is shifted from a complete media to a nitrogen-starved media. Comparisons were made in the following way between fungal mycelial grown in minimal media supplemented with a nitrogen sou...

ORGANISM(S): Magnaporthe grisea

2010-07-01 | E-GEOD-2716 | biostudies-arrayexpress

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2287 Results

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