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MetabolomicsOceanographic setting influences the prokaryotic community and metabolome in deep-sea sponges
Marine sponges (phylum Porifera) are leading organisms for the discovery of bioactive compounds from nature. Their often rich and species-specific microbiota is hypothesised to be producing many of these compounds. Yet, environmental influences on the sponge-associated microbiota and bioactive compo...
2023-05-12 | MTBLS1388 | MetaboLights
MetabolomicsDissolved organic carbon compounds in deep-sea hydrothermal vent fluids from the East Pacific Rise at 9°50′N

Deep-sea hydrothermal vents are unique ecosystems that may release chemically distinct dissolved organic matter to the deep ocean. Here, we describe the composition and concentrations of polar dissolved organic compounds observed in low and high temperature hydrothermal vent fluids at 9°50′N on t...

2017-05-23 | MTBLS428 | MetaboLights
MetabolomicsMetabolomic adaptation of a deep sea Microbacterium sediminis to prolonged low temperature under high pressure
Not available
ORGANISM(S): Microbacterium sediminis 
ST000914 | MetabolomicsWorkbench
GenomicsClostridium sp. 'deep sea' isolate:deep sea
Clostridium sp. 'deep sea' isolate:deep sea Genome sequencing
PRJNA668535 | ENA
ProteomicsDeep-sea in situ and laboratory proteomics provide insights into the sulfur metabolism characteristics of a novel deep-sea bacterium, Pseudodesulfovibrio serpens sp. nov.
Sulfate-reducing bacteria (SRB) are ubiquitously distributed across various biospheres and play key roles in global sulfur and carbon cycles. However, few deep-sea SRB have been cultivated and studied in situ, limiting our understanding of the true metabolism of SRB in the deep biosphere. Here, we f...
ORGANISM(S): environmental samples <bacteria 
2026-02-23 | PXD043318 | Pride
Sulfate-reducing bacteria  cultivation  deep sea  sulfur metabolism  in situ  proteomics  metatranscriptomics 
ProteomicsProteomic Analysis of Intracellular Biomineralised Granules in the Deep-Sea Hydrothermal Vent Alvinellid Worm Paralvinella herssleri
In this project, we used liquid chromatography coupled with mass spectrometry to sequence the intracellular granules of the deep-sea Alvinellidae worm Paralvinella hessleri. These granules are composed of biomineralized orpiment.
ORGANISM(S): Paralvinella hessleri 
2025-09-08 | PXD051377 | Pride
Paralvinella hessleri Hydrothermal vent Intracellular granule Deep-sea Orpiment biominerlization 
GenomicsNovosphingobium sp. ZN18A2 strain:deep sea sediments | isolate:deep sea sediments
Novosphingobium sp. ZN18A2 strain:deep sea sediments | isolate:deep sea sediments Genome sequencing
PRJNA1024658 | ENA
ProteomicsCultivation and characterization of a novel clade of deep-sea Chloroflexi: providing a glimpse of Chloroflexi involved in sulfur cycling
The deep marine subsurface is one of the largest unexplored biospheres on Earth, where members of the phylum Chloroflexi are abundant and globally distributed. However, the deep-sea Chloroflexi have remained elusive to cultivation, hampering a more thorough understanding of their metabolisms. In th...
ORGANISM(S): Chloroflexi 
2024-05-22 | PXD023380 | Pride
Chloroflexi  deep sea  marine subsurface  sulfur cycle  multiple omics 
TranscriptomicsTemporal gill transcriptome of the deep-sea mussel Bathymodiolus azoricus in situ and in the laboratory
The project was designed to explore biological rhythms in the hydrothermal vent mussel Bathymodiolus azoricus. The experiment provides the first high-resolution temporal transcriptomes of an hydrothermal species, both in situ and in the laboratory. For each condition, 5 mussels were sampled every 2h...
ORGANISM(S): Bathymodiolus azoricus 
2020-06-12 | E-MTAB-8451 | biostudies-arrayexpress
GenomicsNocardioidaceae bacterium strain:deep sea | isolate:deep sea
Nocardioidaceae bacterium strain:deep sea | isolate:deep sea Genome sequencing
PRJNA733001 | ENA
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