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OmicsDI

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Unknown (2080)
Transcriptomics (48)
Proteomics (31)
Genomics (14)
Metabolomics (11)
Models (1)

Organisms

Homo sapiens (40)
Mus musculus (26)
Zea mays (3)
Lotus japonicus (2)
Danio rerio (2)
Staphylococcus aureus (2)
Bradyrhizobium japonicum (1)
Cucumis melo (1)
Solanum lycopersicum (1)
Saccharomyces cerevisiae (1)
Candida albicans (1)
Rattus norvegicus (1)
Arabidopsis thaliana (1)
Escherichia coli (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Toxoplasma gondii (1)

Organisms

Fungi (1)
soil metagenome (1)

Repository

biostudies-arrayexpress (51)
pride (29)
MetaboLights (11)
EGA (8)
ENA (3)
BioModels (1)
iProX (1)
MassIVE (1)

Tissue

Cell culture (4)
Liver (3)
Bone marrow (2)
Cell suspension culture (2)
Heart (2)
Neutrophil (2)
Sperm (2)
Blood serum (1)
Colon (1)
Endothelium (1)
Epithelial cell (1)
Extracellular matrix constituent secretion (1)
Hepatocyte (1)
Lung (1)
Lung endothelial cell (1)
Macrophage (1)
Pancreatic acinus (1)
Pancreatic ductal cell (1)
Peripheral blood mononuclear cell (1)
Spermatozoon (1)
T cell (1)

Disease

COVID-19 (4)
Acute erythroid leukemia (1)
Unspecified peripheral T-cell lymphoma (1)
Chronic lymphocytic leukemia (1)
Colon cancer (1)
Disease free (1)
Lung occult adenocarcinoma (1)
Male infertility (1)
Obesity (1)
Pancreatic cancer (1)
Skin cancer (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (29)
Shotgun proteomics (16)
Mass spectrometry (9)
Bottom-up proteomics (6)
Data-independent acquisition (3)
All-ion fragmentation (2)
Data-dependent acquisition (2)
DiaPASEF (2)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
NMR spectroscopy assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - hilic (4)
Illumina HiSeq 2000 (3)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - reverse phase (2)
G2565BA DNA microarray scanner [Agilent] (1)
Illumina HiSeq 2500 (1)
Q Exactive (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Nuclear Magnetic Resonance (NMR) - (1)
Q Exactive HF (Thermo Scientific) (1)

Publication Date

2022 (12)
2012 (11)
2025 (7)
2011 (7)
2019 (7)
2026 (6)
2013 (6)
2014 (5)
2010 (5)
2015 (4)
2023 (4)
2016 (3)
2009 (3)
2007 (3)
2024 (3)
2021 (3)
2020 (2)
2017 (1)
2008 (1)
2018 (1)

CHEBI ID

CHEBI:16335 (4)
CHEBI:16610 (4)
CHEBI:16750 (4)
CHEBI:16704 (3)
CHEBI:16708 (3)
CHEBI:17268 (3)
CHEBI:17858 (3)
CHEBI:29016 (3)
CHEBI:15741 (2)
CHEBI:15756 (2)
CHEBI:15891 (2)
CHEBI:16027 (2)
CHEBI:16264 (2)
CHEBI:16344 (2)
CHEBI:16449 (2)
CHEBI:16737 (2)
CHEBI:16811 (2)
CHEBI:16927 (2)
CHEBI:17148 (2)
CHEBI:17562 (2)
CHEBI:17596 (2)
CHEBI:18107 (2)
CHEBI:18186 (2)
CHEBI:18237 (2)
CHEBI:18257 (2)
CHEBI:21891 (2)
CHEBI:25017 (2)
CHEBI:25094 (2)
CHEBI:26078 (2)
CHEBI:26271 (2)

Metabolite Name

Adenine (2)
Adenosine (2)
Alanine (2)
Arginine (2)
Glucose (2)
Guanosine (2)
N6-methyladenosine (2)
Phosphoric acid (2)
Putrescine (2)
Spermidine (2)
1,3-bisphospho-D-glyceric acid (1)
1,4-beta-D-Glucan (1)
1,5-di-O-E-caffeoylquinic acid (1)
1,6-anhydroglucose (1)
1-(beta-D-Ribofuranosyl)-1,4-dihydronicotinamide (1)
1-(sn-Glycero-3-phospho)-1D-myo-inositol (1)
1-methyladenosine (1)
1-methylguanosine (1)
1-methylinosine (1)
15-hydroxy-eremantholide B (1)
15-hydroxy-eremantholide b (1)
1b,2a-epoxy tagitinin C (1)
2'-O-methyladenosine (1)
2'-O-methylcytidine (1)
2'-O-methylguanosine (1)
2'-O-methyluridine (1)
2-methylmalate (1)
2-oxo-8b-methacryloyloxy-guaia-3,10(14),11(13)-trien-6a,12-olide (1)
2-oxoglutarate (1)
3,4',5-trihydroxy-7-methoxyflavone (1)

IsPrivate

False (1)

First Public Date

2025 (1)
2024 (1)
2020 (1)

Modelling Approach

Steady-state model (1)

Modification

6-dioxaoctanediamine derivatized cysteine (1)

Study type

Transcription profiling by array (36)
RNA-seq of coding RNA (4)
Other (3)
ChIP-seq (2)
RNA-seq of non coding RNA (2)
Cell line - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
DNA-seq (1)
Methylation profiling by array (1)

Release Date

2022 (290)
2025 (260)
2021 (249)
2024 (228)
2023 (225)
2020 (169)
2019 (135)
2018 (100)
2017 (95)
2015 (74)
2016 (61)
2014 (44)
2013 (38)
2012 (33)
2026 (30)
2010 (28)
2009 (23)
2011 (22)
2007 (10)
2008 (9)
2005 (3)
2006 (2)
2004 (1)
2002 (1)
2001 (1)

Lab affiliation

Division of Gastroenterology and Hepatology, School of Medicine, University of Colorado Anschutz Medical Campus,Colorado, USA (2)
Advanced Science Research Center City University of New York (1)
CIISA - Centro de Investigação Interdisciplinar em Sanidade Animal, Faculdade de Medicina Veterinária, Universidade de Lisboa, Lisboa, Portugal (1)
CNIC, Spain (1)
Cell Signalling & Immunology, School of Life Sciences, University of Dundee (1)
Cell Signalling & Immunology, School of life Sciences, University of Dundee (1)
Center of Regenerative Medicine in Barcelona (CMRB) (1)
Center of Regenerative Medicine in Barcelona (CMRB) 3rd Floor Hospital Duran i Reynals Avinguda de la Gran Via, 199-203 08908 Hospitalet de Llobregat (Barcelona), Spain (1)
Centre de Recherches en Cancérologie de Toulouse; INSERM U1037, team 17 PI3K isoforms, signalling and cancerogenesis (1)
Centre for Genomics and Computational Biology Barts Cancer Institute Queen Mary, University of London John Vane Science Centre, Charterhouse Square, London EC1M 6BQ Tel: +44 (0)20 7882 8266 | Fax: +44 (0)20 7882 3891 | Email: p.cutillas@qmul.ac.uk (1)
Centro Nacioanal de Investigaciones Cardiovasculares (CNIC), Madrid, Spain (1)
Centro Nacional de investigaciones Cardiovasculares, CNIC (Madrid, Spain) (1)
Centron Nacional de Investigaciones Cardiovasculares, CNIC (Masdrid, Spain). (1)
Department of Biochemistry and Microbiology, Rutgers, the State University of New Jersey, New Brunswick, NJ, USA. (1)
Department of Microbiology, Immunology, and Molecular Genetics (MIMG), Quantitative & Computational Biosciences (QCBio), University of California, Los Angeles, LA, USA (1)
Department of Vascular Dysfunction, European Center for Angioscience, Medical Faculty Mannheim, Heidelberg University, Ludolf-Krehl-Straße 7-11, 68167 Mannheim, Germany. Department of Vascular Dysfunction, European Center for Angioscience, Medical Faculty Mannheim, Heidelberg University, Ludolf-Krehl-Straße 7-11, 68167 Mannheim, Germany. (1)
Finley and Gygi lab - Cell Biology Department - Harvard Medical School (1)
Genetics Unit, Department of Biomedical Sciences, Faculty of Medicine, Casanova 143, 08036 Barcelona, Spain (1)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (1)
Medical Oncology Department, La Paz University Hospital (1)
Molecular Biology of Reproduction and Development Research Group; Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS); Fundació Clínic per a la Recerca Biomèdica (FCRB); Department of Biomedical Sciences, Faculty of Medicine and Health Sciences, Universitat de Barcelona; Biochemistry and Molecular Genetics Service, Hospital Clínic, Barcelona, Spain (1)
Proteomics Platform CIC bioGUNE Bizkaia Tech. Park Build. 800 48160 Derio (Spain) (1)
Proteomics Service CIC bioGUNE Bizkaia Tech. Park Build. 800 48160 Derio (Spain) (1)
Proteomics Service CIC bioGUNE Bizkaia Tech. Park Build. 800 erio 48160 Spain (1)
UCLA (1)
Unidad de Investigación Biomédica en Cáncer, Instituto Nacional de Cancerología-Instituto de Investigaciones Biomédicas, UNAM/ Dirección General, Instituto Nacional de Medicina Genómica, Periférico Sur 4809, Arenal Tepepan, 1450 Tlalpan, Ciudad de México (1)
University of Victoria (1)
Université de Strasbourg, CNRS, Architecture et Réactivité de l’ARN, UPR9002, F-67000 Strasbourg, France (1)