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GenomicsArabidopsis phytochrome A directly targets numerous promoters for individualized modulation of genes in wide range of pathways [ChIP-seq]
The far-red light (FR) photoreceptor phytochrome A (phyA) contains no DNA binding domain but associates with CHS promoter through its chaperon FHY1 and transcription factors to regulate transcription. Here, we performed a genome-wide identification of phyA targets using a combination of phyA ChIP- a...
ORGANISM(S): Arabidopsis thaliana 
2014-05-06 | E-GEOD-48769 | biostudies-arrayexpress
ProteomicsRheb and TRF1 PhastID mass spectrometric data
Rheb is a small G protein that functions as the direct activator of the mechanistic target of rapamycin complex 1 (mTORC1) to coordinate signaling cascades in response to nutrients and growth factors. Despite extensive studies, the guanine nucleotide exchange factor (GEF) that directly activates Rhe...
ORGANISM(S): Homo Sapiens 
2022-09-29 | PXD037078 |
TranscriptomicsArabidopsis phytochrome A directly targets numerous promoters for individualized modulation of genes in wide range of pathways [RNA-seq]
The far-red light (FR) photoreceptor phytochrome A (phyA) contains no DNA binding domain but associates with CHS promoter through its chaperon FHY1 and transcription factors to regulate transcription. Here, we performed a genome-wide identification of phyA targets using a combination of phyA ChIP- a...
ORGANISM(S): Arabidopsis thaliana 
2014-05-06 | E-GEOD-48767 | biostudies-arrayexpress
GenomicsArabidopsis phytochrome A directly targets numerous promoters for individualized modulation of genes in wide range of pathways
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Arabidopsis thaliana 
2014-05-06 | E-GEOD-48770 | biostudies-arrayexpress
ProteomicsA nuclear pore-anchored condensate enables germ granule organisation and transgenerational epigenetic inheritance
Biomolecular condensates, such as stress and germ granules, often contain sub-compartments. For instance, the Caenorhabditis elegans germ granule, which localizes near the outer nuclear membrane of germ cell nuclei, is composed of at least four ordered compartments, each housing distinct sets of pro...
ORGANISM(S): Caenorhabditis elegans 
2025-02-09 | PXD056752 | Pride
Transgenerational epigenetic inheritance Ddx-19 Condensates C.elegans 
UnknownDevelopment of single nucleotide polymorphisms in key genes of taurine and betaine metabolism in Crassostrea hongkongensis and their association with content-related traits.
Not available
S-EPMC11849188 | biostudies-literature
ProteomicsProteome characteristics of Tolypocladium guangdongense at differentically developmental stages
Tolypocladium guangdongense has a similar metabolite profile to Ophiocordyceps sinensis, a highly regarded fungus used for traditional Chinese medicine with high nutritional and medicinal value. Although the genome sequence of T. guangdongense has been reported, relatively little is known about the ...
ORGANISM(S): Cordyceps guangdongensis 
2021-09-09 | PXD020391 | Pride
Hplc-ms/ms Cordyceps Growth and development stages 
GenomicsChIP-Seq data from Arabidopsis thaliana under dark and far-red light
FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and its homolog FAR-RED IMPAIRED RESPONSE 1 (FAR1) are two transposase-derived transcription factors initially identified as the key components in phytochrome A signaling and recently shown to function in the circadian clock. However, whether FHY3 and FAR1 are in...
ORGANISM(S): Arabidopsis thaliana 
2011-08-02 | E-GEOD-30711 | biostudies-arrayexpress
UnknownFirst Identification of Rare Exonic and Deep Intronic Splice-Altering Variants in Patients With Beta-Sarcoglycanopathy.
Not available
S-EPMC9257024 | biostudies-literature
TranscriptomicsExpression data from Arabidopsis thaliana under dark and far-red light
FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and its homolog FAR-RED IMPAIRED RESPONSE 1 (FAR1) are two transposase-derived transcription factors initially identified as the key components in phytochrome A signaling and recently shown to function in the circadian clock. However, whether FHY3 and FAR1 are in...
ORGANISM(S): Arabidopsis thaliana 
2011-08-01 | E-GEOD-30712 | biostudies-arrayexpress
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