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OtherA gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival [C-HiC]
Gene deserts spanning more than 500kb of non-protein coding genomic sequence are considered evolutionarily ancient and stable and are enriched in the vicinity of developmental regulator genes (Ovcharenko 2005). These extensive genomic regions typically harbor numerous conserved elements with predict...
ORGANISM(S): Mus musculus 
2024-06-01 | GSE232881 | GEO
TranscriptomicsA gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival [RNA-seq]
Gene deserts spanning more than 500kb of non-protein coding genomic sequence are considered evolutionarily ancient and stable and are enriched in the vicinity of developmental regulator genes (Ovcharenko 2005). These extensive genomic regions typically harbor numerous conserved elements with predict...
ORGANISM(S): Homo sapiens 
2024-06-01 | GSE232884 | GEO
GenomicsA gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival [ChIP-seq]
Gene deserts spanning more than 500kb of non-protein coding genomic sequence are considered evolutionarily ancient and stable and are enriched in the vicinity of developmental regulator genes (Ovcharenko 2005). These extensive genomic regions typically harbor numerous conserved elements with predict...
ORGANISM(S): Homo sapiens 
2024-06-01 | GSE232883 | GEO
GenomicsA gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival [ATAC-seq]
Gene deserts spanning more than 500kb of non-protein coding genomic sequence are considered evolutionarily ancient and stable and are enriched in the vicinity of developmental regulator genes (Ovcharenko 2005). These extensive genomic regions typically harbor numerous conserved elements with predict...
ORGANISM(S): Mus musculus 
2024-06-01 | GSE232882 | GEO
UnknownDisease model curation improvements at Mouse Genome Informatics.
Not available
S-EPMC3308153 | biostudies-literature
ProteomicsCharacterization of seminal vesicle proteome of cactus field mouse (Peromyscus eremicus) in hydrated and dehydrated conditions
ABSTRACT: The cactus mouse (Peromyscus eremicus) is a desert-specialized rodent that experiences both chronic and acute dehydration in the Southwestern United States. Our previous research has generated substantial transcriptomic data on P. eremicus kidneys, testes, epididymis, and vas deferens in ...
ORGANISM(S): Peromyscus eremicus 
2022-03-02 | PXD006532 | Pride
Dehydration Proteomics Desert mouse Reproduction 
UnknownDesert landscape features influencing the microgeographic genetic structure of Nelson's pocket mouse Chaetodipus nelsoni.
Not available
S-EPMC11723970 | biostudies-literature
UnknownImpacts of dietary fat on multi tissue gene expression in the desert-adapted cactus mouse.
Not available
S-EPMC11698062 | biostudies-literature
OtherInduced transcription in a gene desert region advanced replication timing
This study investigates whether transcription can directly reorganize DNA replication timing. To isolate the effect of transcription from native chromatin context, we established an inducible transcription system within a large late-replicating gene desert on mouse chromosome 2. Using Repli-seq, we ...
ORGANISM(S): Mus musculus 
2026-07-25 | GSE329934 | GEO
UnknownCharacterization of the transcriptome, nucleotide sequence polymorphism, and natural selection in the desert adapted mouse Peromyscus eremicus.
Not available
S-EPMC4217191 | biostudies-literature
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