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MetabolomicsPhyllosphere microbes mediate variety-specific accumulation of di-n-butyl phthalate in choysum (Brassica parachinensis)

Plant-microbe interactions in the phyllosphere have been demonstrated to facilitate plant growth and enhance resistance to diverse stresses; nevertheless, their role in the bioaccumulation of contaminants by plants is rarely considered. Here, by comparing differences in the phyllosphere morpholog...

2025-07-16 | MTBLS12464 | MetaboLights
GenomicsChIP-seq analyses of 10 quorum sensing regulators in Pseudomonas aeruginosa
The Pseudomonas aeruginosa quorum-sensing (QS) systems contribute to bacterial homeostasis and pathogenicity. Although many regulators have been characterized to control the production of virulence factors and QS signaling molecules, its detailed regulatory mechanisms still remain elusive. Here, we ...
ORGANISM(S): Pseudomonas aeruginosa 
2015-08-04 | E-GEOD-65356 | biostudies-arrayexpress
TranscriptomicsNormal colon top vs colon crypts
The study is to define the genetic programs of human colonic cell differentiation, and to identify candidate markers for colonic stem cells and stem cell niche The study assayed the expression of 9 paired normal colon top versus crypts. Set of arrays organized by shared biological context, such as o...
ORGANISM(S): Homo sapiens 
2007-08-28 | E-GEOD-6894 | biostudies-arrayexpress
GenomicsThe MLL3/MLL4 branch of the COMPASS family regulates H3K4 monomethylation at enhancers
Histone H3 lysine 4 (H3K4) can be mono-, di-, and trimethylated by members of the COMPASS (COMplex of Proteins ASsociated with Set1) family from yeast to human and these modifications can be found at distinct regions of the genome. Monomethylation of histone H3K4 (H3K4me1) is relatively more enriche...
ORGANISM(S): Homo sapiens 
2013-09-30 | E-GEOD-51176 | biostudies-arrayexpress
ProteomicsThe Parkinson's disease protein alpha-synuclein is a direct modulator of Processing-bodies and mRNA stability
Hallacli E, Kayatekin C, Nazeen S, Wang XH, Sheinkopf Z, Sathyakumar S, Sarkar S, Jiang X, Dong X, Di Maio R, Wang W, Keeney MT, Felsky D, Sandoe J, Vahdatshoar A, Udeshi ND, Mani DR,Carr SA, de Jager P, Myers CL, Lindquist S, Greenmyre TJ, Bartel DP, Feany MB, Sunyaev S, Chung CY and Khurana V. Alp...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2022-03-09 | MSV000089026 | MassIVE
UnknownLong-term follow-up study on the impact of a gut microbiota-supportive diet on heart failure and mortality outcomes.
Not available
S-EPMC12661986 | biostudies-literature
UnknownCas9 has no exonuclease activity resulting in staggered cleavage with overhangs and predictable di- and tri-nucleotide CRISPR insertions without template donor.
Not available
S-EPMC6796948 | biostudies-literature
TranscriptomicsTranscription profiling of S. pneumonia early response to to THP-1 human macrophages
Transcriptional responses of an unencapsulated Streptococcus pneumoniae strain derived from TIGR4 to human macrophages THP-1 were investigated at the early stages of interactions (0.5 h, 1 h and 3h).
ORGANISM(S): Streptococcus pneumoniae 
2008-10-21 | E-FPMI-16 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Streptococcus pneumoniae TCS08 mutant (disrupted in rr08) compared to the parent wild type strain TIGR4
Transcriptional changes of an TCS08 mutant (disrupted in rr08) compared to the parent wild-type strain TIGR4 when both strains were cultured to early logarithmic growth phase in THY broth.
ORGANISM(S): Streptococcus pneumoniae 
2008-12-20 | E-FPMI-17 | biostudies-arrayexpress
TranscriptomicsIdentification of microRNAs involved in cold stress response in grapevine.
Two small RNA libraries were generated from micropropagated â??Muscat Hamburgâ?? (Vitis vinifera) plantlets under normal and low temperatures (4 °C). A total of 163 known miRNAs and 299 putative novel miRNAs were detected from two small RNA libraries by Solexa sequencing. Forty-four cold-inducible ...
ORGANISM(S): Vitis vinifera 
2016-06-14 | E-GEOD-68970 | biostudies-arrayexpress
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