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MetabolomicsA novel strategy for mining and identification of acylcarnitines using data-independent-acquisition (DIA) based retention time prediction modeling and pseudo-characteristic fragmentation ions matching
It is a challenging work to screen, identify, and quantify acylcarnitines in complex biological samples. A method, based on the retention time (RT) prediction and data-independent acquisition strategies, was proposed for the large-scale identification of acylcarnitines using liquid chromatography co...
2021-10-06 | MTBLS1932 | MetaboLights
ProteomicsNarrow precursor window for DIA-MS enhances protein identification and quantification
Data independent acquistion (DIA) is becoming widely as a method of choice in quantitation proteomics due to its high reproducibility and quantitation accuracy at high-throughput fashion. In this project, we systematically evaluated the effect of the selected precursor mass range for DIA-MS on the p...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2021-10-01 | PXD026965 | Pride
Arabidopsis Data independent acqusition (dia) Lc-ms/ms 
ProteomicsSimultaneous targeted and discovery-driven clinical proteotyping using hybrid-PRM/DIA
Background MS-based proteotyping has been widely used for biomarker discovery. However, the clinical/translational proteotyping community requires strategies that not only enable the discovery of novel biomarker candidates but also increase the likelihood of establishing these protein-based biomarke...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
MSV000092996 | MassIVE
ProteomicssJIA serum proteome profiling with DIA-MS
We performed a DIA-MS proteomic analysis of sera from systemic juvenile idiopathic arthritis with different activity phases using a high protein depletion process. We profiled the proteins in the sera that differed significantly in their activity phase.
ORGANISM(S): Homo Sapiens (human) 
2022-04-26 | PXD030413 | JPOST Repository
UnknownComparative Analyses of Data Independent Acquisition Mass Spectrometric Approaches: DIA, WiSIM-DIA, and Untargeted DIA.
Not available
S-EPMC5817406 | biostudies-literature
ProteomicsHRMS1 DIA and DDA of Lyso-IP inputs from mouse gut epithelium and stem cells
These mouse gut lysates contained three sets, with Set A including 21 DDA experiments and 21 DIA experiments, Set C including 24 DDA and 24 DIA experiments, and Set G including 27 DDA RAWs and 26 DIA RAWs (one of the Set G DDA experiments was run twice). Experiment Set A was intended to compare lys...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2024-07-26 | MSV000095444 | MassIVE
UnknownSimultaneous targeted and discovery-driven clinical proteotyping using hybrid-PRM/DIA.
Not available
S-EPMC10988896 | biostudies-literature
UnknownUncertainty management in regulatory and health technology assessment decision-making on drugs: guidance of the HTAi-DIA Working Group.
Not available
S-EPMC11570246 | biostudies-literature
ProteomicsMulti-platforms approach for plasma: complementarity of Olink PEA technology to DIA-based mass spectrometry-based protein profiling
Plasma proteome is the ultimate target for the biomarker discovery. It stores an endless amount of information on the pathophysiological status of a living organism, which however is still difficult to comprehensively access. The high structural complexity of the plasma proteome can be addressed by ...
ORGANISM(S): Homo sapiens (Human) 
2022-03-10 | PXD020261 | Pride
Olink technology Dia-ms Kora: cooperative health research in the region of augsburg 
Unknowndia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts.
Not available
S-EPMC9270362 | biostudies-literature
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