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TranscriptomicsSalicylic acid-induced gene expression in wild-type Col-0 and mutant ube4 Arabidopsis thaliana plants
Activation of plant immunity is associated with dramatic transcriptome reprogramming to prioritise immune responses over normal cellular functions. Changes in gene expression are coordinated by the immune hormone salicylic acid (SA). Here we investigated the involvement of the E4 ubiquitin ligase UB...
ORGANISM(S): Arabidopsis thaliana 
2019-03-20 | E-MTAB-7369 | biostudies-arrayexpress
OtherA Coordinated Proteomic Approach for Identifying Proteins that Interact with the E. coli Ribosomal Protein S12.
Data from PASSEL: [[https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/PASS_View?datasetPassword=IR4769n&identifier=PASS00136 PASS00136]]. Experiment: 1st exerimental NAc pQ MeS, data file: F571953.mgf. Data published as part of J Proteome Res. 2013 12:1289-99 . From the Abstract: {{i}} ... To f...
ORGANISM(S): Escherichia_coli_k_12_substr__dh10b, Escherichia_coli_k_12_substr__mg1655, Enterobacteria_phage_13a, Enterobacteria_phage_933w, Enterobacteria_phage_alpha3, Enterobacteria_phage_ba14, Enterobacteria_phage_bp_4795, Enterobacteria_phage_bz13, Enterobacteria_phage_cdti, Enterobacteria_phage_ecods1, Enterobacteria_phage_eps7, Enterobacteria_phage_epsilon15, Enterobacteria_phage_es18, Enterobacteria_phage_felix_01, Enterobacteria_phage_fels_2, Enterobacteria_phage_fi_sensu_lato, Enterobacteria_phage_g4_sensu_lato, Enterobacteria_phage_hk022, Enterobacteria_phage_hk620, Enterobacteria_phage_hk97, Enterobacteria_phage_i2_2, Enterobacteria_phage_id18_sensu_lato, Enterobacteria_phage_id2, Enterobacteria_phage_if1, Enterobacteria_phage_ike, Enterobacteria_phage_jk06, Enterobacteria_phage_js10, Enterobacteria_phage_js98, Enterobacteria_phage_jse, Enterobacteria_phage_k1e, Enterobacteria_phage_k1f, Enterobacteria_phage_k1_5, Enterobacteria_phage_lambda, Enterobacteria_phage_m13, Enterobacteria_phage_min27, Enterobacteria_phage_ms2, Enterobacteria_phage_mu, Enterobacteria_phage_n15, Enterobacteria_phage_n4, Enterobacteria_phage_p1, Enterobacteria_phage_p2, Enterobacteria_phage_p22, Enterobacteria_phage_p4, Enterobacteria_phage_phi1, Enterobacteria_phage_phieco32, Enterobacteria_phage_phiecom_gj1, Enterobacteria_phage_phip27, Enterobacteria_phage_phiv10, Enterobacteria_phage_phix174_sensu_lato, Enterobacteria_phage_prd1, Enterobacteria_phage_psp3, Enterobacteria_phage_rb14, Enterobacteria_phage_rb32, Enterobacteria_phage_rb43, Enterobacteria_phage_rb49, Enterobacteria_phage_rb51, Enterobacteria_phage_rb69, Enterobacteria_phage_rtp, Enterobacteria_phage_sf6, Enterobacteria_phage_sfv, Enterobacteria_phage_sp6, Enterobacteria_phage_ssl_2009a, Enterobacteria_phage_st104, Enterobacteria_phage_st64t, Enterobacteria_phage_st_1, Enterobacteria_phage_t1, Enterobacteria_phage_t3, Enterobacteria_phage_t4, Enterobacteria_phage_t5, Enterobacteria_phage_t7, Enterobacteria_phage_tls, Enterobacteria_phage_vt2_sakai, Enterobacteria_phage_wa13_sensu_lato, Enterobacteria_phage_wv8, Enterobacteria_phage_yyz_2008, Enterobacteriophage_qbeta 
GPM11210013346 | GPMDB
TranscriptomicsTranscription profiling of Arabidopsis Col-0 wild-type and 35S:ARR1-SRDX transgenic seedlings either induced with 6-Benzyladenine or mock-treated
6 days old Arabidopsis thaliana of Col-0 wild-type and 35S:ARR1-SRDX transgenic seedlings grown in liquid culture (1/2 MS, 1 g/L sucrose, 0.5 g/L MES, pH 5.7) were induced with either 5 µM 6-Benzyladenine (a cytokinin analog) for 15 or 120 min, or mock-treated 120 min as a control. These samples wer...
ORGANISM(S): Arabidopsis thaliana 
2008-07-03 | E-ATMX-11 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of the Antarctic springtail Cryptopygus antarcticus to investigate cold hardening processes.
High group animals with supercooling point (SCP) above -15°C and selected low group animals with SCP below -15°C were prepared from Cryptopygus antarcticus collected from wet moss (Sanionia uncinata (Hedw.)) during the austral summer of 2005 at the British Antarctic Survey's research station at Rot...
ORGANISM(S): Cryptopygus antarcticus 
2008-09-01 | E-MEXP-1569 | biostudies-arrayexpress
TranscriptomicsTranscription profiling and cross species hybridization of Sordaria macrosopora samples undergoing sexual development (wt.sex), wild type growing vegetatively (wt.veg), and mutant strains pro1, pro41, and pro1/41 on Neurospora crassa arrays
Cross-species hybridizations of Sordaria macrospora targets on Neurospora crassa microarrays were performed with targets derived from the S. macrospora wild type undergoing sexual development (wt.sex), the wild type growing vegetatively (wt.veg), and the mutant strains pro1, pro41, and pro1/41 (pro1...
ORGANISM(S): Sordaria macrospora 
2007-05-09 | E-MEXP-915 | biostudies-arrayexpress
TranscriptomicsIRF-3, IRF-5, and IRF-7 coordinately regulate the type I IFN response in myeloid dendritic cells downstream of MAVS signaling
Myeloid dendritic cells from WT, Irf3-/-xIrf7-/-, Irf3-/-xIrf5-/-xIrf7-/-, Mavs-/- (IPS1-/-)and Ifnar-/- mice were infected with West Nile virus to assess the contributions of specific signaling and transcription factors in initiating the antiviral response RPMI + rmGM-CSF purified bone marrow deriv...
ORGANISM(S): Mus musculus 
2013-04-23 | E-GEOD-41355 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of male Schistosoma mansoni to investigate the effect of sexual maturation on gene expression
Experiment studying the effect of maturation on gene expression of S. adult male S. mansoni (LE strain).
ORGANISM(S): Schistosoma mansoni 
2007-06-27 | E-MEXP-972 | biostudies-arrayexpress
TranscriptomicsCap completion and CTD kinase recruitment govern the initiation-elongation transition of RNA polymerase II
After transcription initiation, RNA polymerase (Pol) II escapes from the promoter and recruits elongation factors. Here we used chromatin immunoprecipitation (ChIP) to elucidate the general initiation-elongation transition of Pol II in yeast. We extended our ChIP-chip occupancy profiling to capping ...
ORGANISM(S): Saccharomyces cerevisiae 
2013-07-30 | E-MTAB-1552 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of unisexual female Schistosoma mansoni adult worms obtained from male or female mice hosts to investigate the effect of host sex
Experiment studying the effect of host sex on unisex adult female S. mansoni worms.
ORGANISM(S): Schistosoma mansoni 
2007-12-01 | E-MEXP-1189 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of unisexual male Schistosoma mansoni adult worms obtained from male or female mice hosts to investigate the effect of host sex
Experiment studying the effect of host sex on unisexual male S. mansoni adult worms.
ORGANISM(S): Schistosoma mansoni 
2007-12-01 | E-MEXP-1188 | biostudies-arrayexpress
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