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Genomics
Strong and lasting impacts of past global warming on baleen whales and their prey
PRJNA791939 | ENA
Proteomics,MultiomicsDIA-Umpire: comprehensive computational framework for data independent acquisition proteomics
This dataset consists of 44 raw MS files, comprising 27 DIA (SWATH) and 15 DDA runs on a TripleTOF 5600 and of two raw mass spectrometry files acquired on a Q Exactive. The composition of the dataset is described in the manuscript by Tsou et al., titled: "DIA-Umpire: comprehensive computational fra...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) Homo Sapiens (ncbitaxon:9606) 
2017-04-27 | MSV000081023 | MassIVE
ProteomicsComparative proteomics identifies different metabolic pathways activated by p53 mutants G245S and R337H associated with Li-Fraumeni syndrome
Li-Fraumeni syndrome (LFS) is a hereditary cancer predisposition disorder associated with germline mutations in the TP53 tumor suppressor gene. The p53 mutation spectrum associated with LFS is similar to that found in somatic tumors, with most of them, such as the G245S mutation, occurring in the DN...
ORGANISM(S): Homo sapiens (Human) 
2026-06-29 | PXD025056 | Pride
Metabolism Oxidative phosphorylation Li-fraumeni syndrome R337h Respiration Cancer cells G245s Tp53 Glycolysis Mutation 
UnknownTaurine Supplementation to Plant-Based Diets Improves Lipid Metabolism in Senegalese Sole.
Not available
S-EPMC10177204 | biostudies-literature
ProteomicsSubfamily C7 Raf-like kinases MRK1, RAF26, and RAF39 regulate immune homeostasis and stomatal opening in Arabidopsis thaliana
The calcium-dependent protein kinase CPK28 is a regulator of immune homeostasis in multiple plant species. Here, we used a proteomics approach to uncover CPK28-associated proteins. We found that CPK28 associates with subfamily C7 Raf-like kinases MRK1, RAF26, and RAF39, and trans-phosphorylates RAF2...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2024-09-30 | PXD052803 | Pride
Quantitative proteomics 
ProteomicsAnalysis of cardiac ischemia-reperfusion injury using DIA proteomics and N-terminomics
Data used in the publication: Analysis of cardiac ischemia-reperfusion injury using DIA proteomics and N-terminomics reveals alterations in mitochondrial function and metabolism
ORGANISM(S): Rattus (ncbitaxon:10114) 
MSV000092906 | MassIVE
ProteomicsPeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements
Global proteomics datasets to study ash utilization by R. toruloides. PeakDecoder is a workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. It is available at https://github.com/EMSL-Computing/PeakDecoder
ORGANISM(S): Rhodosporidium Toruloides Np11 (ncbitaxon:1130832) 
2023-02-03 | MSV000091202 | MassIVE
ProteomicsCatalytically inactive subgroup VIII receptor-like cytoplasmic kinases regulate the immune-triggered oxidative burst in Arabidopsis thaliana
Protein kinases are key components of multiple cell signaling pathways. Several protein kinases of the receptor-like cytoplasmic kinase (RLCK) family have demonstrated roles in immune and developmental signaling across various plant species, making them a family of interest in the study of phosphory...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2025-05-07 | PXD052679 | Pride
Arabidopsis thaliana Protein kinase 
ProteomicsMannose-6-phosphate isomerase functional status shapes a rearrangement in the proteome and degradome of mannose-treated melanoma cells
Metabolic reprogramming is a ubiquitous feature of transformed cells, comprising one of the hallmarks of cancer and enabling neoplastic cells to adapt to new environments. Accumulated evidence reports on the failure of some neoplastic cells to convert mannose-6-phosphate into fructose-6-phosphate, t...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-02-16 | MSV000094098 | MassIVE
ProteomicsD.rerio - Muscle, SC (Blattmannetal,scidata.2019)
abundance based on Spectral counting, Interaction consistency score: 9.3, Coverage: 3
ORGANISM(S): 7955 
2019-00-00 | 2391772399 | PAXDB
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