Different carbon sources

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Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia. Pok Man Leung, pok.leung@monash.edu, Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia Ralf B. Schittenhelm, ralf.schittenhelm@monash.edu, Monash Proteomics and Metabolomics Facility and Department of Biochemistry, Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia (1)
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Transcription profiling of E. coli cultures grown on different carbon sources

The study investigated the effect of different carbon sources on E. coli global gene expression. We grew MG1655 cells aerobically in MOPS minimal medium with either glucose, glycerol, succinate, L-alanine, acetate, or L-proline as the carbon supply. Samples were taken from each culture at mid log ph...

ORGANISM(S): Escherichia coli

2007-07-19 | E-GEOD-2037 | biostudies-arrayexpress

Integrative Analysis of Transcriptome and Proteome for a new Rumen-derived Bacillus Licheniform in regulating microenvrionment Treating with Different Carbon Sources

Bacillus licheniformis (B. licheniformis) is a microorganism with a wide range of probiotic properties and applications. Isolation and identification of novel strains is a major aspect of microbial research. Besides, the role of different carbon sources affects B. licheniformis in regulating micro-e...

ORGANISM(S): Bacillus licheniformis

2024-01-26 | PXD042310 | Pride

Photosynthetic Carbon Partitioning and Metabolic Regulation in Response to Very-Low and High CO2 in Microchloropsis gaditana NIES 2587

Photosynthetic organisms fix inorganic carbon through carbon capture machinery (CCM) that regulates the assimilation and accumulation of carbon around ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco). However, few constraints that govern the central carbon metabolism are regulated by the ca...

2022-01-14 | MTBLS1778 | MetaboLights

Transcriptome response to different carbon sources in Acetobacter aceti

Acetic acid bacteria are obligately aerobic alphaproteobacteria that have a unique ability to incompletely oxidize various alcohols and sugars to organic acids. The ability of these bacteria to incompletely oxidize ethanol to acetate has been historically utilized for vinegar production. The mechani...

ORGANISM(S): Acetobacter aceti NBRC 14818

2011-01-17 | E-GEOD-24361 | biostudies-arrayexpress

Transcriptomic analysis of cellulolytic fungus Penicillium oxalicum and transcription factor mutant strains in response to different carbon sources

RNA-seq was used to compare the responses of Penicillium oxalicum strains to different carbon sources including carbon-starvation, glucose and cellulose. The wild-type strain and transcription facor (ClrB, CreA and AmyR) mutants were studied. A total of 24 samples were analzyed, which include biolog...

ORGANISM(S): Penicillium oxalicum

2015-05-28 | E-GEOD-69298 | biostudies-arrayexpress

Transcriptome-wide expression profile of yeast under different carbon sources

PRJNA544475 | ENA

Transcriptomic response of Trichoderma atroviride to different carbon sources

PRJNA1438639 | ENA

M. sedula transcriptional response under "strict" carbon-limited autotrophy compared to carbon "rich" autotrophy and heterotrophy

Metallosphaera sedula is an extremely thermoacidophilic archaeon that grows heterotrophically on peptides, and chemolithoautotrophically on hydrogen, sulfur, or reduced metals as energy sources. During autotrophic growth, carbon dioxide is incorporated into cellular carbon via the 3-hydroxypropionat...

ORGANISM(S): Metallosphaera sedula DSM 5348

2013-03-05 | E-GEOD-39944 | biostudies-arrayexpress

RNA-Seq of Clostridium cellulovorans cultured in different carbon sources in exponential phase

PRJEB57453 | ENA

The proteomics of Streptomyces sp. F-3 on different carbon sources

A lable-free quantitative proteomics method was employed to study the difference of Streptomyces sp. F-3 when it grown on different carbon sources

ORGANISM(S): Streptomyces Sp. F-3

2025-03-25 | PXD062196 |

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