Distance measurements

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UNIPROT ID/AC

TPIS_HUMAN (32)
G3P_HUMAN (32)
NU155_HUMAN (32)
SORL_HUMAN (32)
CATA_HUMAN (32)
EMC1_HUMAN (32)
MINP1_HUMAN (32)
PSA_HUMAN (32)
TFR1_HUMAN (32)
DHR11_HUMAN (31)
CANB1_HUMAN (31)
ODBA_HUMAN (31)
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GRP75_HUMAN (31)
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S10A8_HUMAN (31)
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LCLT1_HUMAN (31)
ALBU_HUMAN (31)
SSU72_HUMAN (31)

CHEBI ID

CHEBI:28044 (7)
CHEBI:17822 (5)
CHEBI:6650 (5)
CHEBI:16196 (5)
CHEBI:32816 (5)
CHEBI:30915 (5)
CHEBI:28716 (5)
CHEBI:15756 (5)
CHEBI:17351 (5)
CHEBI:30769 (5)
CHEBI:33508 (4)
CHEBI:48430 (4)
CHEBI:18186 (4)
CHEBI:16811 (4)
CHEBI:25017 (4)
CHEBI:28875 (4)
CHEBI:17754 (4)
CHEBI:16865 (4)
CHEBI:7916 (4)
CHEBI:15891 (4)
CHEBI:17964 (4)
CHEBI:18012 (4)
CHEBI:16414 (4)
CHEBI:27897 (4)
CHEBI:15603 (4)
CHEBI:17596 (4)
CHEBI:16828 (4)
CHEBI:16765 (3)
CHEBI:30805 (3)
CHEBI:59640 (3)

Metabolite Name

Asparagine (5)
Adenosine (5)
Proline (5)
Nicotinamide (4)
Taurine (4)
Malic acid (4)
Phenylalanine (4)
Isoleucine (4)
Adenine (4)
Tryptophan (4)
Inosine (4)
Hypoxanthine (4)
2'-Deoxyadenosine (3)
3-Methylcrotonylglycine (3)
Pyruvic acid (3)
Oxoglutaric acid (3)
Leucine (3)
N-Acetylvaline (3)
Valine (3)
Spermine (3)
L-Aspartic acid (3)
L-Proline (3)
2'-Deoxycytidine (3)
Putrescine (3)
Ornithine (3)
N-Acetylornithine (3)
Pantothenic acid (3)
Methionine (3)
Choline (3)
Fumaric acid (3)

First Public Date

2014 (4)
2026 (3)
2025 (3)
2024 (3)
2020 (3)
2019 (2)
2018 (2)
2017 (2)
2013 (1)

Modification

N6 (1)

Study type

Transcription profiling by array (26)
RNA-seq of coding RNA (13)
Comparative genomic hybridization by array (6)
ChIP-seq (3)
Unknown experiment type (2)
RNA-seq of coding RNA from single cells (2)
ChIP-chip by tiling array (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (257)
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2023 (214)
2020 (195)
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2009 (35)
2011 (32)
2026 (32)
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2006 (22)
2007 (14)
2005 (12)
2004 (7)
2001 (4)
2003 (2)
2002 (2)
1991 (1)

Lab affiliation

Department of Chemistry and Chemical Biology, Harvard University (3)
Functional Genomics, University Medicine Greifswald, Germany (2)
Department of Computer Science, Applied Bioinformatics, University of Tübingen, Tübingen, 72076, Germany (1)
Center for Diagbostik, Institute of Neuropathology, University Medical Center Hamburg Eppendorf, Germany (1)
Department of Biotechnology, University of Chemistry and Technology, Prague, 166 28 Prague, Czech Republic (1)
Molecular Immune and Cell Biology Laboratory of Molecular Immunology Life and Medical Sciences Institute (LIMES), University of Bonn, Carl-Troll-Str.31, 53115 Bonn, Germany (lab head) (1)
Prof. Dr. Martin von Bergen Helmholtz Centre for Environmental Research - UFZ Head of Department for Molecular Systems Biology http://www.ufz.de/index.php?de=17634 Professor of Functional Proteomics Faculty of Life Sciences, Pharmacy and Psychology University of Leipzig Permoserstr. 15 04318 Leipzig GERMANY (1)
Johns Hopkins University, Chemistry (1)
Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana 47907 Center for Plant Biology, Purdue University, West Lafayette, Indiana 47907 Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907 (1)
1Department of Chemistry, University of Konstanz, Konstanz, Germany 2Konstanz Resea1Department of Chemistry, University of Konstanz, Konstanz, Germany 2Konstanz Research School-Chemical Biology, University of Konstanz, Konstanz, Germany (1)
Head of the department of Proteomics and Signal Transduction at the MPI of Biochemistry (1)
Chair of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, Scotland, United Kingdom (1)
Spatial Proteomics Lab, Max Delbrück Center for Molecular Medicine Berlin, Germany (1)
Department of Aquatic Ecology, Eawag, Überlandstrasse 133, 8600 Dübendorf, Switzerland (1)
Max Planck Institute for Biophysical Chemistry, 37077 Göttingen, Germany Institute of Clinical Chemistry, University Medical Center Göttingen, 37075 Göttingen, Germany (1)
Department Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany NNF Center for Protein Research University of Copenhagen, Copenhagen, Denmark (1)
VIB-UGent Center for Medical Biotechnology Gent Department of Biomolecular Medicine (1)
Laboratory of Biochemistry and Mass Spectrometry, Department of Biology, University of Konstanz (1)
Department of Biologyy, University of Rochester, NY, USA University of Rochester Mass Spectrometry Resource Laboratory, NY, USA (1)
University Children's Research@Kinder-UKE, University Medical Center Hamburg-Eppendorf, Hamburg, Germany. (1)
Emmy-Noether Research Group Cellular Proteomics and Metabolic Signaling Institute for Diabetes and Obesity Helmholtz Diabetes Center - Munich Germany (1)
Department of Chemistry University of Konstanz (1)
Laboratoire PRISM INSERM U1192 (1)
Medical Mycology Laboratory, SSPC Pharma Research Centre, Biology Department, Maynooth University, Co. Kildare, Ireland. (1)
Department of Biology, University of Rome Tor Vergata, Rome, Italy Telethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Naples, Italy (1)
Maynooth University, Ireland (1)
Leibniz-Institut fur Analytische Wissenschaften - ISAS - e.V. (1)
College of Life Sciences, University of Dundee (1)
Interfaculty Institute of Biochemistry Universität Tübingen Hoppe-Seyler Straße 4 72076 Tübingen Germany (1)
Department of Mitochondrial Biology, Max Planck Institute for Biology of Ageing, Cologne, Germany Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden (1)

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Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters

Despite extensive research, our understanding of the rules according to which cis-regulatory sequences are converted into gene expression is limited We devised a method for obtaining parallel, highly accurate gene expression measurements from thousands of designed promoters and applied it to measure...

ORGANISM(S): Saccharomyces cerevisiae

2012-05-20 | E-GEOD-37851 | biostudies-arrayexpress

DISMS2: A flexible algorithm for direct proteome-wide distance calculation of LC-MS/MS runs

The classification of samples on a molecular level has manifold applications, from cancer biology, where the goal is to classify patients according to effective treatments, to phylogenetics to identify evolutionary relationships between species. In such scenarios modern molecular methods are based o...

ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse) Saccharomyces cerevisiae (Baker's yeast) Drosophila melanogaster (Fruit fly) Caenorhabditis elegans

2017-03-13 | PXD004824 | Pride