Dna interference

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Unknown (2277)
Transcriptomics (1683)
Genomics (772)
Proteomics (115)
Other (39)
Metabolomics (27)
Methylation profiling (18)

Organisms

Homo sapiens (752)
Caenorhabditis elegans (384)
Mus musculus (261)
Drosophila melanogaster (244)
Arabidopsis thaliana (106)
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Saccharomyces cerevisiae (28)
Rattus norvegicus (22)
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synthetic construct (8)
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Nicotiana attenuata (4)
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Populus tremula x Populus tremuloides (4)
Populus tremula x Populus alba (4)
Glycine max (4)
Meleagris gallopavo (3)
Vanderwaltozyma polyspora (3)
Brugia malayi (3)
Dictyostelium discoideum (3)
Aedes aegypti (3)

Organisms

Homo sapiens (169)
Mus musculus (45)
Schizosaccharomyces pombe (23)
Arabidopsis thaliana (22)
Drosophila melanogaster (14)
Saccharomyces cerevisiae (13)
Caenorhabditis elegans (7)
Oryza sativa (4)
Escherichia coli (4)
Rattus norvegicus (3)
Saccharolobus islandicus REY15A (2)
Human immunodeficiency virus 1 (2)
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Streptococcus pneumoniae D39 (1)
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Escherichia coli str. K-12 substr. MG1655 (1)
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Pseudomonas aeruginosa UCBPP-PA14 (1)
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Meloidogyne incognita (1)
Streptococcus salivarius (1)
Fusarium fujikuroi (1)
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compost metagenome (1)
Mammalia (1)
Medicago truncatula (1)

Repository

biostudies-arrayexpress (1820)
ENA (422)
geo (258)
pride (84)
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EGA (15)
iProX (6)
jPOST (4)
EVA (1)
PanoramaPublic (1)
PeptideAtlas (1)

Tissue

Cell culture (21)
Blood cell (8)
Blood (5)
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Embryo (3)
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Root (3)
Cell suspension culture (2)
Early embryonic cell (2)
Embryonic stem cell (2)
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Lung (2)
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Brain (1)
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Breast epithelium (1)
C2C12 cell (1)
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Disease

Acute leukemia (4)
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Normal (2)
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Non-small cell lung carcinoma (2)
Toxicity (1)
Myeloid neoplasm (1)
Blumeria graminis hordei (powdery mildew) inoculation (1)
Oligodendroglioma (1)
Mammary adenocarcinoma (pleural effusion) (1)
Healthy (1)
Infected (1)
Bladder cancer (1)
Colon carcinoma (1)
Small interference (1)
Colorectal carcinoma (1)
IBDV infected (1)
T-cell acute lymphoblastic leukemia (1)
Pre-diabetic (1)
Not infected (1)
Cancer (1)
Colorectal adenocarcinoma (1)
Lung cancer (1)
Acute myeloid leukemia (1)
Brain glioblastoma multiforme (1)
Breast cancer (1)
COVID-19 (1)
Colon cancer (1)
Coronavirus infectious disease (1)

Technology Type

Mass Spectrometry (84)
Shotgun proteomics (42)
Bottom-up proteomics (21)
Mass spectrometry (16)
Affinity purification coupled with mass spectrometry proteomics (15)
Mass spectrometry assay (11)
Data-dependent acquisition (9)
SWATH MS (9)
Gel-based experiment (4)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Data-independent acquisition (3)
Illumina HiSeq 2000 (2)
MSE (2)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
HDMSE (1)

Instrument Platform

Illumina NovaSeq 6000 (24)
Illumina HiSeq 2000 (21)
Illumina HiSeq 2500 (15)
NextSeq 500 (14)
Illumina HiSeq 4000 (7)
Illumina Genome Analyzer II (4)
Illumina MiSeq (4)
Illumina Genome Analyzer IIx (3)
NextSeq 2000 (3)
Illumina HiSeq 1500 (3)
NextSeq 550 (3)
PromethION (2)
2100 Bioanalyzer (2)
Agilent G2565AA and G2565BA Microarray Scanner (2)
418 [Affymetrix] (2)
G2505B DNA microarray scanner (2)
Illumina HiSeq 1000 (2)
BGISEQ-500 (2)
Sequel II (1)
Rstudio (1)
NextSeq500 (1)
Illumina Hiseq 2500 (1)
Tapestation (1)
Small RNA Sample Prep Kit v1.5 (1)
RNAeasy kit (NimbleGen) (1)
Illumina TruSeq stranded ribo-minus Plant (1)
MS10 plates (1)
ScriptSeq complete kit Low input (Bacteria) (Epicentre) (1)
TRIzol (Sigma Aldrich) (1)
Axon GenePix 4000A scanning hardware (1)

Publication Date

2013 (344)
2010 (271)
2012 (231)
2011 (228)
2014 (150)
2015 (138)
2008 (123)
2016 (110)
2009 (92)
2025 (73)
2026 (69)
2022 (53)
2024 (52)
2023 (47)
2019 (44)
2007 (43)
2017 (32)
2020 (27)
2021 (23)
2018 (22)
2006 (22)
2005 (13)
2004 (6)
2003 (4)

UNIPROT ID/AC

A0A024RC46 (1)
A0A087WTX5 (1)
A0A087WUD1 (1)
A0A087WVW2 (1)
A0A087WXI0 (1)
A0A087WYL9 (1)
A0A087X130 (1)
A0A087X1V9 (1)
A0A0A0MR66 (1)
A0A0A0MS07 (1)
A0A0A0MS51 (1)
A0A0B4J220 (1)
A0A0C4DG89 (1)
A0FGR8 (1)
A0FGR8-2 (1)
A0FGR8-6 (1)
A0M8Q6 (1)
A1L170 (1)
A2NUT2 (1)
A4D110 (1)
A4F255 (1)
A5A3E0 (1)
A6NCN2 (1)
A6NHL2 (1)
A6NHQ2 (1)
A6NHR9 (1)
A6NL93 (1)
A6NNZ2 (1)
A7E2Y1 (1)
A8K2U0 (1)

ENSEMBL ID

ENSG00000170477 (1)

CHEBI ID

CHEBI:16750 (6)
CHEBI:16704 (6)
CHEBI:17596 (6)
CHEBI:17154 (5)
CHEBI:16335 (5)
CHEBI:15940 (5)
CHEBI:15891 (5)
CHEBI:18344 (5)
CHEBI:17368 (5)
CHEBI:28997 (4)
CHEBI:17768 (4)
CHEBI:17172 (4)
CHEBI:16450 (4)
CHEBI:18132 (4)
CHEBI:16040 (4)
CHEBI:1427 (4)
CHEBI:15676 (4)
CHEBI:16708 (4)
CHEBI:17724 (4)
CHEBI:17752 (4)
CHEBI:17562 (4)
CHEBI:17748 (4)
CHEBI:17015 (4)
CHEBI:16235 (4)
CHEBI:17650 (4)
CHEBI:17509 (4)
CHEBI:17750 (4)
CHEBI:21547 (4)
CHEBI:17405 (4)
CHEBI:30915 (4)

Metabolite Name

Creatinine (8)
Adenosine (7)
L-Carnitine (7)
Citrulline (6)
Phytosphingosine (6)
Maltotriose (6)
Adenine (6)
Guanosine (6)
Biotin (6)
L-Phenylalanine (6)
Hypoxanthine (6)
Betaine (5)
Niacinamide (5)
5-Methylcytosine (5)
Pyridoxamine (5)
L-Histidine (5)
Indole (5)
Oleamide (5)
N-Acetylputrescine (5)
Guanine (5)
L-Tryptophan (5)
Cytidine (5)
Deoxycytidine (5)
Creatine (5)
Glycerophosphocholine (5)
Inosine (5)
Solanidine (4)
N-(1-Deoxy-1-fructosyl)valine (4)
Costunolide (4)
Indole-5,6-quinone (4)

First Public Date

2014 (65)
2025 (64)
2026 (56)
2024 (41)
2022 (35)
2023 (27)
2020 (26)
2019 (26)
2017 (20)
2021 (17)
2018 (13)
2013 (13)
2015 (12)
2016 (6)
2011 (1)

Classification

bacteria (14)
fungi (3)
viruses (3)

Modification

N6 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (788)
ChIP-seq (244)
RNA-seq of coding RNA (230)
ChIP-chip by tiling array (193)
RNA-seq of non coding RNA (143)
RNAi profiling by array (56)
Unknown experiment type (33)
Other (24)
Comparative genomic hybridization by array (17)
Transcription profiling by tiling array (13)
ChIP-chip by array (9)
DNA-seq (9)
Methylation profiling by array (9)
Methylation profiling by high throughput sequencing (8)
Genotyping by array (6)
Cell line - High-throughput sequencing (5)
MicroRNA profiling by array (5)
RNA-seq of total RNA (5)
Plant - One-color microarray (2)
Animal - High-throughput sequencing (2)
CLIP-seq (2)
Hi-C (2)
Transcription profiling by MPSS (1)
Tiling path by array (1)
CLIP-Seq (1)
Plant - High-throughput sequencing (1)
Cell line - One-color microarray (1)
Transcription profiling by RT-PCR (1)
4C (1)
Ribo-seq (1)

Release Date

2013 (424)
2010 (338)
2012 (301)
2011 (290)
2014 (267)
2015 (232)
2016 (205)
2025 (194)
2008 (181)
2022 (174)
2021 (162)
2017 (159)
2020 (158)
2009 (146)
2024 (141)
2018 (139)
2019 (137)
2023 (136)
2007 (85)
2006 (68)
2005 (47)
2026 (32)
2004 (31)
2003 (20)
2001 (9)
2002 (7)
2000 (6)
1998 (5)
1999 (3)

Lab affiliation

Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (3)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (2)
Max-Planck-Institute for Biology of Ageing Department of Mitochondrial Proteostasis Joseph-Stelzmann-Str. 9b 50931 Cologne (2)
Moffitt Cancer Center (2)
Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Centro de Biociências e Biotecnologia, Laboratório de Química e Função de Proteínas e Peptídeos, Prédio P5, Sala 228, Bairro Parque Califórnia, Campos dos Goytacazes, RS - CEP: 28013-602 (2)
., Department of Laboratory Medicine, Medical University of Vienna, 18-20 Währinger Gürtel, 1090 Vienna, Austria (1)
1)Program for Predictive and Personalized Medicine of Cancer, Germans Trias i Pujol Research Institute (PMPPC-IGTP), 08916 Badalona, Spain 2)Cancer and Leukemia Epigenetics and Biology Program, Josep Carreras Leukaemia Research Institute (IJC), Campus ICO-GTP-UAB, 08916 Badalona, Spain (1)
Advanced Clinical Biosystems Research Institute, Smidt Heart Institute, Cedars-Sinai Medical Center 127 S San Vicente Blvd, Los Angeles, CA 90048, USA (1)
Amgen Inc. (1)
Assistant professor, Biochemistry and Molecular Biology, Johns Hopkin Bloomberg Schools of Public Health, USA. (1)
Associate Professor, Department of Biology, Massachusetts Institute of Technology Whitehead Institute of Biomedical Research (1)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute of Biomedical Research (lab head) (1)
Baylor College of Medicine (1)
Biological Engineering, CEHS, MIT (1)
CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
Cancer Research Institute, Beth Israel Deaconess Cancer Center Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, USA. (1)
CeMM, Research Center for Molecular Medicine of the Austrian Academy of Sciences; Vienna, Austria (1)
Center for Cancer Research, Massachusetts General Hospital, Boston MA, USA;Department of Chemistry and Chemical Biology, Harvard University, Cambridge MA, USA. (1)
Center of Excellence on Translational Research in Inflammation and Immunology (CETRII), Department of Microbiology, Chulalongkorn University, Bangkok 10330, Thailand (1)
Circadian Clock Project, Tokyo Metropolitan Institute of Medical Science, Kamikitazawa 2-1-6, Setagaya-ku, Tokyo, 156-8506, Japan. (1)
College of Life Sciences, Fujian Agriculture and Forestry University, (1)
Department of Biochemistry, Institute of Chemistry, University of São Paulo, São Paulo, Brazil (1)
Department of Biochemistry, University of Oxford, OX13QU, Oxford, United Kingdom (1)
Department of Biological Engineering, Koch Institute of Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA (1)
Department of Biological Sciences, Vanderbilt University (1)
Department of Cellular and Molecular Pharmacology, QUantitative Bioscience Institute, University of California, San Francisco (1)
Department of Chemistry & Molecular Biology, University of Gothenburg, Sweden (1)
Department of Molecular Biology, Biomedical Center Munich, Ludwig-Maximilians University, Großhaderner Strasse 9, 82152 Planegg-Martinsried, Germany (1)
Department of Molecular Medicine (DMM), Biochemistry Unit, Center for Health Technologies (CHT), UdR INSTM University of Pavia, Pavia, Italy (1)

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Structure of the minimal type I-F2 CRISPR-Cas DNA-interference complex

CRISPR–Cas systems provide adaptive immunity in prokaryotes by targeting and degrading invasive genetic elements. Among them, the type I-F2 system represents the most compact type I CRISPR–Cas system, distinguished by the absence of small and large subunits. These subunits are otherwise essential fo...

ORGANISM(S): Shewanella putrefaciens CN-32

2026-03-09 | PXD068253 | Pride

pAgo-induced DNA interference protects bacteria from invader DNA [smDNA]

PRJNA625102 | ENA

pAgo-induced DNA interference protects bacteria from invader DNA [gDNA]

PRJNA625095 | ENA

Profiling of circadian genes expressed in the uterus endometrial stromal cells of pregnant rats as revealed by DNA microarray coupled with RNA interference

The peripheral circadian oscillator plays an essential role in synchronizing local physiology to operate in a circadian manner via regulation of the expression of clock-controlled genes. In the murine uterus, the endometrial stromal cells undergo proliferation and differentiation into decidual cells...

ORGANISM(S): Rattus norvegicus

2013-07-23 | E-GEOD-49080 | biostudies-arrayexpress

High throughput decoding of anti trypanosomal drug efficacy and resistance

We used all five current human African trypanosomiasis drugs for genome-scale RNA interference (RNAi) target sequencing (RIT-seq) screens in Trypanosoma brucei, revealing the transporters, organelles, enzymes and metabolic pathways that function to facilitate anti-trypanosomal drug action. RIT-seq p...

ORGANISM(S): Trypanosoma brucei

2011-11-29 | E-ERAD-30 | biostudies-arrayexpress

RNA interference-independent reprogramming of DNA methylation in Arabidopsis

PRJNA625566 | ENA

Cooler temperatures destabilize RNA interference and increase susceptibility of disease vector mosquitoes to viral infection

The impact of global climate change on the transmission dynamics of infectious diseases is the subject of extensive debate. The transmission of mosquito-borne viral diseases is particularly complex, with climatic variables directly affecting many parameters associated with the prevalence of disease ...

ORGANISM(S): Aedes albopictus

2013-08-13 | E-GEOD-46204 | biostudies-arrayexpress

Global effects of the CSR-1 RNA interference pathway on transcriptional landscape

Argonaute proteins and their small RNA co-factors short interfering RNAs (siRNAs) are known to inhibit gene expression at the transcriptional and post-transcriptional levels. In Caenorhabditis elegans, the Argonaute CSR-1 binds thousands of endogenous siRNAs (endo-siRNAs) antisense to germline trans...

ORGANISM(S): Caenorhabditis elegans

2014-02-28 | E-GEOD-49946 | biostudies-arrayexpress

pAgo-induced DNA interference protects bacteria from invader DNA

PRJNA625099 | ENA

Meiotic prophase length modulates Tel1-dependent DNA double-strand break interference

PRJNA1027830 | ENA

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