Do Anna A - OmicsDI

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Unknown (131)
Transcriptomics (49)
Genomics (11)
Proteomics (8)
Metabolomics (4)
Genomic (2)
Models (1)

Organisms

Homo sapiens (37)
Mus musculus (8)
Schizosaccharomyces pombe (3)
Rattus norvegicus (3)
Drosophila melanogaster (3)
Saccharomyces cerevisiae (2)
Arabidopsis thaliana (2)
Xenopus laevis (1)
Staphylococcus aureus (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Sus scrofa domesticus (1)

Organisms

Salmonella enterica subsp. enterica serovar Typhimurium (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (51)
EGA (7)
pride (5)
MetaboLights (4)
MassIVE (3)
dbGaP (2)
ENA (2)
BioModels (1)

Tissue

Cell culture (2)
Cell suspension culture (1)
Intestine (1)
Valve cell (1)

Disease

Oligodendroglioma (1)
Small cell lung carcinoma (1)
Normal (1)
Aortic valve stenosis (1)
Glioblastoma (1)

Technology Type

Mass Spectrometry (5)
Mass spectrometry (4)
Shotgun proteomics (4)
Illumina CytoSNP, Illumina HumanOmni2.5, ILLUMINA, Illumina 450k, Illumina HiSeq 2000 (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
ScanArray 5000 [PerkinElmer] (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
G2565BA DNA microarray scanner [Agilent] (1)
ScanArray Express HT [PerkinElmer] (1)
Illumina NovaSeq 6000 (1)
NextSeq 500 (1)
LTQ Orbitrap (1)
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TimsTOF Pro (1)
Liquid Chromatography MS - (1)
TSQ Quantum Ultra (Thermo Scientific) (1)

Publication Date

2014 (8)
2008 (8)
2015 (7)
2013 (5)
2012 (5)
2005 (5)
2010 (4)
2022 (3)
2023 (3)
2024 (2)
2026 (2)
2016 (2)
2011 (2)
2007 (2)
2020 (2)
2019 (1)
2009 (1)
2006 (1)
2021 (1)

CHEBI ID

CHEBI:145243 (1)
CHEBI:15843 (1)
CHEBI:16235 (1)
CHEBI:16737 (1)
CHEBI:16958 (1)
CHEBI:169798 (1)
CHEBI:17256 (1)
CHEBI:174210 (1)
CHEBI:17509 (1)
CHEBI:176327 (1)
CHEBI:176382 (1)
CHEBI:17712 (1)
CHEBI:178015 (1)
CHEBI:178016 (1)
CHEBI:178017 (1)
CHEBI:178018 (1)
CHEBI:178019 (1)
CHEBI:17859 (1)
CHEBI:194285 (1)
CHEBI:229948 (1)
CHEBI:24116 (1)
CHEBI:27676 (1)
CHEBI:28376 (1)
CHEBI:33508 (1)
CHEBI:34302 (1)
CHEBI:53486 (1)
CHEBI:60943 (1)
CHEBI:61204 (1)
CHEBI:68434 (1)
CHEBI:71182 (1)

Metabolite Name

Xanthine (2)
(+)-Aspidospermidine (1)
(3-hydroxy-2-octadeca-9,12-dienoyloxypropyl) octadeca-9,12-dienoate (1)
(Z)-5-Hexadecenoic acid (1)
1,2,3,6-Tetragalloylglucose (1)
1,2,4,5-Tetrathiane (1)
1,2-Dipalmitoyl-rac-glycero-3-phosphoethanolamine (1)
1,3-Diarachidin (1)
1,6-DINITROPYRENE (1)
1,7-di-O-phosphonohept-2-ulose (1)
1-Hydroxy-3-methoxy-7-primeverosyloxyxanthone (1)
1a-hydroxy-21-nor-20-oxavitamin D3 (1)
2,3-Dimercaptosuccinic acid (1)
2-(4-Chloro-3,5-dimethylphenoxy)-N-(2-phenyl-2H-benzotriazol-5-yl)-acetamide (1)
2-(Methylthio)benzothiazole (1)
2-Amino-5-chloromuconate 6-semialdehyde (1)
2-Hydroxy-2-methylbutyric acid (1)
2-Keto-6-acetamidocaproate (1)
2-S-glutathionyl acetate (1)
2-amino-4-oxo-4-phosphonooxybutanoic acid (1)
2-ureidoglycine (1)
3,5,3'-triiodothyropyruvic acid (1)
3-(2,2-Dichlorovinyl)-2,2-dimethylcyclopropane carboxylic acid (1)
3-(4-hydroxy-3,5-diiodophenyl)-2-oxopropanoic acid (1)
3-(Methylthio)acryloyl-CoA; Methylthioacryloyl-CoA; 3-(Methylsulfanyl)acryloyl-CoA (1)
3-Bromo-5-chloro-2,6-dihydroxybenzoic acid (1)
3-Deazauridine (1)
3-Hydroxypyridine sulfate (1)
3-O-Methylquercetin (1)
3-O-Sulfogalactosylceramide (32:1) (1)

IsPrivate

False (1)

First Public Date

2018 (1)
2017 (1)

Classification

bacteria (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (32)
Methylation profiling by array (7)
Other (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of coding RNA (2)
RNAi profiling by array (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
ChIP-seq (1)
MicroRNA profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2023 (19)
2025 (14)
2020 (13)
2022 (12)
2015 (12)
2021 (12)
2018 (12)
2024 (11)
2017 (10)
2014 (9)
2016 (8)
2008 (8)
2019 (7)
2013 (6)
2012 (6)
2026 (5)
2005 (5)
2010 (4)
2011 (3)
2009 (2)
2007 (2)
2006 (1)
2003 (1)

Lab affiliation

Associate Member Developmental Neurobiology St. Jude Children's Research Hospital (1)
Departement of pharmacy, Laboratory for the Analysis of Medicines, University of Liege, Belgium (1)
Department of Medical Biotechnology Faculty of Biochemistry, Biophysics and Biotechnology Jagiellonian University Gronostajowa 7 30-387 Krakow, Poland (1)
Laboratory of Cardiovascular Medicine, Department of Cardiac, Thoracic, Vascular Sciences and Public Health, University of Padova, Padua, Italy (1)
Research Centre for Personalized Medicine, Almazov National Medical Research Centre, Saint Petersburg, Russia (1)

Tags

xref:PubMed:30201777 (1)
xref:PubMed:29256862 (1)
pathogen (1)
pathogen:bacterium (1)

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Liquid chromatography coupled to high-resolution mass spectrometry metabolomics: A useful tool for investigating tumor secretome based on a three-dimensional co-culture model

Three-dimensional (3D) cell culture technologies, which more closely mimic the complex microenvironment of tissue, are being increasingly evaluated as a tool for the preclinical screening of clinically promising new molecules, and studying of tissue metabolism. Studies of metabolites released int...

2023-12-12 | MTBLS5375 | MetaboLights

Do Airway Epithelium Air-liquid Cultures Represent the In Vivo Airway Epithelium Transcriptome?

Human airway epithelial cells cultured in vitro at air-liquid interface (ALI) form a pseudostratified epithelium that forms tight junctions and cilia, and produces mucin, and are widely used as a model of differentiation, injury, and repair. To assess how closely the transcriptome of ALI epithelium ...

ORGANISM(S): Homo sapiens

2010-07-07 | E-GEOD-18637 | biostudies-arrayexpress

Isometric exercises do not provide immediate pain relief in Achilles tendinopathy: A quasi-randomized clinical trial.

Not available

S-EPMC7496962 | biostudies-literature

Response of Methicillin-resistant Staphylococcus aureus to Amicoumacin A

Methicillin resistant Staphylococcus aureus (MRSA) infection is becoming refractory to existing antibiotic therapy owing to the inherent ability of S. aureus to develop rapid resistance and is considered a major threat to public health. We found that a natural isolate of Bacillus pumilus from the C...

ORGANISM(S): Staphylococcus aureus

2012-07-30 | E-GEOD-31342 | biostudies-arrayexpress

Serum Predose Metabolic Profiling For Prediction Of Rosuvastatin Pharmacokinetic Parameters In Healthy Volunteers

Rosuvastatin is a quite known lipid-lowering agent generally used for hypercholesterolemia treatment and coronary artery diseases prevention. There is substantial inter-individual variability in the absorption of statins usually caused by genetic polymorphisms leading to variation in the correspondi...

2021-10-29 | MTBLS3128 | MetaboLights

Topological and variational modularity: A case study using the pectoral girdle across the Chrosomus eos-neogaeus hybridization complex.

Not available

S-EPMC12688015 | biostudies-literature

Precise photopharmacological eradication of metastatic tumor cells.

Not available

S-EPMC11892682 | biostudies-literature

Three Out of Ten Working Patients Expect No Clinical Improvement of Their Ability to Perform Work-Related Knee-Demanding Activities After Total Knee Arthroplasty: A Multicenter Study.

Not available

S-EPMC6675779 | biostudies-literature

Methyl Effect on the Metabolism, Chemical Stability, and Permeability Profile of Bioactive N-Sulfonylhydrazones.

Not available

S-EPMC9631887 | biostudies-literature

Chulian2021 - feedback signalling in B lymphopoeisis

Salvador Chulián, Álvaro Martínez-Rubio, Anna Marciniak-Czochra, Thomas Stiehl, Cristina Blázquez Goñi, Juan Francisco Rodríguez Gutiérrez, Manuel Ramírez Orellana, Ana Castillo Robleda, Víctor M. Pérez-García & María Rosa. Dynamical properties of feedback signalling in B lymphopoiesis: A mathematic...

2024-09-02 | BIOMD0000001056 | BioModels

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