Donnelly J J - OmicsDI

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Genomics (91)
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Homo sapiens (62)
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Disease free (2)
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Amyotrophic lateral sclerosis type 1 (1)
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Mass Spectrometry (28)
Bottom-up proteomics (11)
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Illumina 1.2M, Affymetrix 6.0, Affymetrix 6.0 - CHIAMO (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Data-dependent acquisition (1)
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Instrument Platform

Illumina HiSeq 2000 (2)
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Illumina Genome Analyzer II (1)
Illumina HiSeq 2500 (1)
Instrument (1)
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Liquid Chromatography MS - alternating - hilic (1)

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2015 (9)
2016 (7)
2013 (5)
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2009 (1)
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CHEBI ID

CHEBI:15684 (3)
CHEBI:15721 (3)
CHEBI:15741 (3)
CHEBI:16414 (3)
CHEBI:17203 (3)
CHEBI:27512 (3)
CHEBI:27681 (3)
CHEBI:32816 (3)
CHEBI:140570 (2)
CHEBI:142593 (2)
CHEBI:14314 (2)
CHEBI:15428 (2)
CHEBI:15584 (2)
CHEBI:15603 (2)
CHEBI:15753 (2)
CHEBI:15971 (2)
CHEBI:15999 (2)
CHEBI:16015 (2)
CHEBI:16217 (2)
CHEBI:16335 (2)
CHEBI:16444 (2)
CHEBI:16467 (2)
CHEBI:16530 (2)
CHEBI:1656 (2)
CHEBI:16643 (2)
CHEBI:16753 (2)
CHEBI:16828 (2)
CHEBI:168422 (2)
CHEBI:16857 (2)
CHEBI:168648 (2)

Metabolite Name

(R)-2,3-Dihydroxy-isovalerate (2)
(S)-3-Hydroxybutyric acid (2)
1-Hexylglycerol (2)
2,5-Dimethyl-1H-pyrrole (2)
2-(1-Ethoxyethoxy)propanoic acid (2)
3-Hexanone (2)
3-Hydroxy-2-methyl-[S-(R,R)]-butanoic acid (2)
3-Hydroxysuberic acid (2)
3-Mercaptolactic acid (2)
3-Methoxy-4,5-methylenedioxycinnamaldehyde (2)
3-Phospho-D-erythronate (2)
4-Hydroxynonenal (2)
4-Hydroxyphenylpyruvic acid (2)
5-Aminopentanal (2)
5-Hydroxy-4-pentenoic acid d-lactone (2)
6-Phosphogluconic acid (2)
Adenosine (2)
Allopurinol (2)
Aminoadipic acid (2)
Aspartyl-Threonine (2)
Citramalic acid (2)
D-Fructose 6-phosphate (2)
D-Glucose (2)
D-Phenyllactic acid (2)
D-Ribulose 5-phosphate (2)
Dichloroacetate (2)
Dihydrolipoate (2)
Dimethylethanolamine (2)
Endothion (2)
Glyceric acid (2)

First Public Date

2022 (10)
2024 (9)
2026 (6)
2020 (5)
2018 (5)
2017 (5)
2023 (4)
2021 (1)
2016 (1)

Study type

Transcription profiling by array (10)
ChIP-seq (1)
RNA-seq of coding RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (165)
2021 (142)
2025 (121)
2023 (117)
2024 (107)
2020 (99)
2016 (93)
2018 (88)
2019 (83)
2015 (80)
2014 (80)
2017 (70)
2013 (67)
2012 (49)
2011 (43)
2010 (31)
2009 (24)
2026 (24)
2008 (16)
2007 (10)
2003 (3)
2006 (2)
2001 (2)
2000 (2)
2005 (1)
2004 (1)

Lab affiliation

Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (10)
Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA (1)
Department of Chemistry, Donnelly Centre for Cellular and Biomolecular Research,Institute of Biomaterials and Biomedical Engineering, University of Toronto (1)
Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, ON, M5S 3H6, Canada Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada Institute of Biomedical Engineering, University of Toronto, 164 College Street, Toronto, ON, M5S 3G9, Canada. (1)
Department of Fundamental Neurosciences, University of Lausanne, Lausanne, Switzerland (1)
Donnelly CCBR, University of Toronto, Toronto ON M5S 3E1, Canada (1)
Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto ON M5S 3E1, Canada (1)
Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto ON M5S 3E1, Canada; Department of Molecular Genetics, University of Toronto, Toronto ON M5S 1A8, Canada (1)
Donnelly Centre, University of Toronto Lunenfeld-Tanenbaum Research Institute, Sinai Health System (1)
Institut des Sciences du Sport de l'Université de Lausanne Bâtiment Synathlon 1015 Lausanne Switzerland (1)
Institute of Biomaterials and Biomedical Engineering, Department of Chemical Engineering, Department of Chemistry, Department of Materials Science and Engineering, University of Toronto, 164 College Street, Toronto, Ontario M5S 3G9, Canada. Terrence Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, 160 College Street, Toronto, Ontario, M5S 3E1, Canada. (1)
Max Delbrueck Centrum, Berlin Charité, Berlin (1)
Max Delbrueck centrum, Berlin Charité, Berlin (1)
Northeastern University (1)
Professor in Infectious Diseases School of Biological Sciences Medical Biology Centre (MBC) Queen's University Belfast Belfast UK (1)
Professor, Institute of Biomaterials & Biomedical Engineering, University of Toronto Canada Research Chair in Stem Cell Bioengineering Terrence Donnelly Centre for Cellular and Biomolecular Research Chief Scientific Officer, Centre for Commercialization of Regenerative Medicine FRSC (1)
School of Biological Sciences, Queen's University Belfast Institute for Global Food Security, Queen's University Belfast (1)
The Donnelly Centre, University of Toronto, Toronto, ON, Canada M5S 3E1 & Department of Molecular Genetics, University of Toronto, Toronto, ON, Canada M5S 1A8 (1)
University of Pittsburgh (1)

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Function, evolution, and structure of J-domain proteins.

Not available

S-EPMC6363617 | biostudies-literature

Novel Kinesin Family 1A Variants Linked to Atypical Parkinsonism Elicit Altered Neuronal TDP-43 Interactions and Dendritic Atrophy

We used patient induced pluripotent stem cells (IPSC) derived neurons from a patient with two mutations in KIF1A to evaluate the quantitative changes to KIF1A protein interaction, relative to wild-type control IPSC-motor neurons, using an anti-KIF1A antibody during immunoprecipitation. Given the rel...

ORGANISM(S): Homo sapiens (Human)

2025-08-26 | PXD067234 | Pride

MicroRNA-570 is a novel regulator of cellular senescence and inflammaging.

Not available

S-EPMC6338629 | biostudies-literature

Global Landscape of Cell Envelope Protein Complexes in Escherichia coli

After extraction with mild non-denaturing detergents, we affinity-purified 785 endogenously-tagged CEPs and then identified stably-associated polypeptides by precision mass spectrometry. The resulting high-quality physical interaction network, comprising most (77%) of all targeted CEPs, revealed hu...

ORGANISM(S): Escherichia coli (strain K12 / W3110 / ATCC 27325 / DSM 5911)

2017-11-30 | PXD006247 | Pride

Escherichia coli Multi-protein complexes Macromolecues Protein-protein interactions Cell envelope Cell envelope proteins Cell envelope protein complexes

Genetic diversity and Wolbachia infection in the Japanese encephalitis virus vector Culex tritaeniorhynchus in the Republic of Korea.

Not available

S-EPMC11656722 | biostudies-literature

The J-IDEA Pandemic Planner: A Framework for Implementing Hospital Provision Interventions During the COVID-19 Pandemic.

Not available

S-EPMC7610624 | biostudies-literature

The human Hsp70/JDP interaction network

PRJNA692992 | ENA

Multi-level cellular and functional annotation of single-cell transcriptomes using scPipeline.