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ProteomicsIdentifying Cilary Proteins in Bovine Retinas using a Gentile Extraction Method
Mutations in retinal primary cilia are responsible for human blindness but the mechanisms are not fully understood. Characterizing the proteome of an organelle such as cilia, is a fruitful way to understand its function but methods often require considerable sample quantities. Here we develop a meth...
ORGANISM(S): Bos taurus (Bovine) 
2024-07-11 | PXD051952 | Pride
Bovine Rod outer segment Photoreceptor Retina Primary cilia 
ProteomicsSystematic discovery of endogenous ribonucleoprotein complexes - RNA DIF-FRAC mouse embryonic stem cell
The associated files are mass spec data from size exclusion chromatographic separations of mouse embryonic stem cells with and without RNAse A treatment.
ORGANISM(S): Mus musculus (Mouse) 
2019-10-18 | PXD014607 | Pride
Protein complexes Biochemical fractionation Rna binding protein Rnp Ribonucleoprotein complex Interactome Dif-frac Rbp 
ProteomicsSystematic discovery of endogenous ribonucleoprotein complexes - RNA DIF-FRAC Human HEK293T Cells Replicate1
The associated files are mass spec data from size exclusion chromatographic separations of Human HEK293T with and without RNAse A treatment.
ORGANISM(S): Homo sapiens (Human) 
2019-10-18 | PXD015406 | Pride
Rbp Ribonucleoprotein complex Rnp Dif - frac Rna binding protein Proteomics Mass spectrometry Biochemical fractionation Protein complex es Interactome 
ProteomicsSystematic discovery of endogenous ribonucleoprotein complexes - RNA DIF-FRAC Human HEK293T Cells Replicate2
The associated files are mass spec data from size exclusion chromatographic separations of Human HEK293T with and without RNAse A treatment.
ORGANISM(S): Homo sapiens (Human) 
2019-10-25 | PXD014820 | Pride
Proteomics Ribonucleoprotein complex Protein complexes Biochemical fractionation Rna binding protein Dif-frac Rnp Interactome Rbp 
ProteomicsA systematic, label-free method for identifying RNA-associated proteins in vivo provides insights into vertebrate ciliary beating - RNA DIF-FRAC Xenopus laevis Animal Cap explants Replicate 1
The associated files are mass spec data from size exclusion chromatographic separations of Xenopus laevis animal cap explants with and without RNAse A treatment.
ORGANISM(S): Xenopus laevis (African clawed frog) 
2020-03-10 | PXD017659 | Pride
Differential fractionation Xenopus laevis Rna dif-frac Ribonucleoprotein complex Animal cap explant 
ProteomicsA systematic, label-free method for identifying RNA-associated proteins in vivo provides insights into vertebrate ciliary beating - RNA DIF-FRAC Xenopus laevis Animal Cap explants Replicate 2
The associated files are mass spec data from size exclusion chromatographic separations of Xenopus laevis animal cap explants with and without RNAse A treatment.
ORGANISM(S): Xenopus laevis (African clawed frog) 
2020-03-10 | PXD017650 | Pride
Differential fractionation Xenopus laevis Rna dif-frac Ribonucleoprotein complex Animal cap explant 
TranscriptomicsMOTS-c: A Novel Peptide Encoded by a Short Mitochondrial Open Reading Frame Regulates Metabolic Homeostasis
Mitochondria are known to be functional organelles, but their role as a signaling unit is increasingly being appreciated. The recent identification of a short open reading frame (sORF) in the mitochondrial DNA (mtDNA) that encodes a signaling peptide, humanin, suggests the possible existence of addi...
ORGANISM(S): Homo sapiens 
2015-03-07 | E-GEOD-65068 | biostudies-arrayexpress
ProteomicsFunctional partitioning of a liquid-like organelle during assembly of axonemal dyneins
The associated files are the results of AP-MS experiments done from Xenopus multiciliated cells derived from dissected animal caps. Baits used for affinity purification were GFP-dnai2, GFP-wdr78, and GFP-C16orf71. Note that some files associated with the C16orf71 experiments may be mislabeled C16o...
ORGANISM(S): Xenopus Laevis (ncbitaxon:8355) 
2020-03-10 | MSV000085075 | MassIVE
ProteomicsbeadsEnrichment_L1-L4
L1-L4 mixture, Beads enrichment, Heparin-IEX
ORGANISM(S): Caenorhabditis Elegans (c. Elegans) 
2016-12-31 | PAe005573 | PeptideAtlas
ProteomicswholeCellExtract_L4-stage
L4 stage, whole protein extact, Heparin-IEX
ORGANISM(S): Caenorhabditis Elegans (c. Elegans) 
2016-12-31 | PAe005556 | PeptideAtlas
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