Du Run R - OmicsDI

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Unknown (117)
Proteomics (42)
Transcriptomics (19)
Metabolomics (18)
Genomics (1)

Organisms

Homo sapiens (35)
Mus musculus (10)
Schizosaccharomyces pombe (3)
Bos taurus (2)
Helicoverpa armigera (2)
Salmo salar (1)
Plasmodium falciparum (1)
Bacteria (1)
Bivalvia (1)
Chlorocebus aethiops (1)
Danio rerio (1)
Escherichia coli (1)
Escherichia coli O157:H7 (1)
Escherichia coli O26:H11 (1)
Gallus gallus (1)
JC polyomavirus (1)
Macaca mulatta (1)
Mycobacterium tuberculosis H37Rv (1)
Neisseria meningitidis (1)
Rattus norvegicus (1)
Saccharomyces cerevisiae (1)
Salmonella enterica subsp. enterica serovar Enteritidis (1)
Salmonella enterica subsp. enterica serovar Muenchen (1)
Salmonella enterica subsp. enterica serovar Newport (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Sarbecovirus (1)
Shigella flexneri (1)
Shigella sonnei (1)
Trypanosoma brucei (1)
Vitis vinifera (1)

Repository

pride (42)
biostudies-arrayexpress (20)
MetaboLights (18)

Tissue

Cell culture (8)
Liver (4)
Blood serum (3)
Brain (3)
Heart (3)
Lung (3)
Cell suspension culture (2)
Epithelial cell (2)
Kidney (2)
Pheromone gland (2)
B cell (1)
Blood (1)
Bone tissue (1)
Brain macroglial cell (1)
Bronchoalveolar lavage (1)
Cardiac muscle cell (1)
Cerebrospinal fluid (1)
Egg (1)
Embryo (1)
Hepatocyte (1)
Lung cancer cell line (1)
Lymphocyte (1)
Mantle (1)
Melanocyte (1)
Microglial cell (1)
Nerve cord (1)
Oviductal fluid (1)
Pancreatic islet (1)
Permanent cell line cell (1)
Plant cell (1)

Disease

Breast cancer (2)
Mantle cell lymphoma (1)
Normal (1)
Acute leukemia (1)
Amyotrophic lateral sclerosis (1)
COVID-19 (1)
Cervix carcinoma (1)
Colorectal cancer (1)
Colorectal carcinoma (1)
Duchenne muscular dystrophy (1)
Kidney disease (1)
Lung cancer (1)
Osteosarcoma (1)
Pulmonary tuberculosis (1)
Skin melanoma (1)
Squamous cell carcinoma (1)
Trypanosomiasis (1)

Technology Type

Mass Spectrometry (42)
Shotgun proteomics (18)
Mass spectrometry (13)
Gel-based experiment (7)
Mass spectrometry assay (5)
Bottom-up proteomics (5)
Data-dependent acquisition (5)
Data-independent acquisition (5)
Affinity purification coupled with mass spectrometry proteomics (4)
Top-down proteomics (4)
NMR spectroscopy (2)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
HDMSE (1)
Immunopeptidomics (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (8)
Liquid Chromatography MS - negative - reverse phase (7)
Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - positive - hilic (2)
Nuclear Magnetic Resonance (NMR) - (2)
Q Exactive (2)
GenePix 4000B [Axon Instruments] (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
Diode array detection MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse phase - LTQ Orbitrap Velos (Thermo Scientific) (1)
Liquid Chromatography MS - negative - reverse phase - LTQ-Orbitrap (1)
Liquid Chromatography MS - negative- reverse phase (1)
Liquid Chromatography MS - positive - reverse phase - LTQ Orbitrap Velos (Thermo Scientific) (1)
Liquid Chromatography MS - positive- reverse phase (1)
UHPLC-DAD-HR-MS/MS (1)

Publication Date

2022 (10)
2021 (9)
2025 (8)
2026 (7)
2024 (6)
2018 (5)
2023 (5)
2014 (4)
2017 (4)
2020 (4)
2015 (3)
2010 (3)
2004 (3)
2012 (2)
2008 (2)
2019 (2)
2013 (1)
2011 (1)
2016 (1)

CHEBI ID

CHEBI:27897 (8)
CHEBI:15891 (7)
CHEBI:17306 (7)
CHEBI:17687 (7)
CHEBI:27266 (7)
CHEBI:30769 (7)
CHEBI:37024 (7)
CHEBI:16708 (6)
CHEBI:16737 (6)
CHEBI:16831 (6)
CHEBI:16919 (6)
CHEBI:17126 (6)
CHEBI:17368 (6)
CHEBI:27732 (6)
CHEBI:28044 (6)
CHEBI:28300 (6)
CHEBI:28867 (6)
CHEBI:29016 (6)
CHEBI:30746 (6)
CHEBI:68433 (6)
CHEBI:116314 (5)
CHEBI:15354 (5)
CHEBI:15611 (5)
CHEBI:15746 (5)
CHEBI:15756 (5)
CHEBI:15940 (5)
CHEBI:16027 (5)
CHEBI:16335 (5)
CHEBI:16359 (5)
CHEBI:16610 (5)

Metabolite Name

Azelaic acid (4)
Creatine (4)
Hippuric acid (4)
L-Pyroglutamic acid (4)
Sphinganine (4)
Taurine (4)
Tryptophan (4)
Valine (4)
(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-(2-phenylethoxy)oxane-3,4,5-triol (3)
16-Heptadecyne-1,2,4-triol (3)
17alpha-Hydroxyprogesterone (3)
3-Methoxytyramine (3)
3-Methylcrotonylglycine (3)
3-hydroxy-3-methylpentanedioic acid (3)
4-Hydroxybenzaldehyde (3)
AMP (3)
Adenine (3)
Arachidonic acid (3)
Benzoic acid (3)
Butylparaben (3)
Cafestol (3)
Citric acid (3)
Creatinine (3)
D-(+)-Maltose (3)
D-Raffinose (3)
Docosahexaenoic acid (3)
Docosanamide (3)
Glycocholic acid (3)
Indole-3-acetic acid (3)
Kynurenic acid (3)

Modification

57.021464 (1)

Study type

Transcription profiling by array (12)
RNA-seq of coding RNA (3)
Transcription profiling by tiling array (1)
ChIP-seq (1)
Methylation profiling by array (1)
Genotyping by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2023 (18)
2025 (17)
2022 (15)
2024 (13)
2021 (10)
2019 (9)
2018 (8)
2015 (7)
2020 (7)
2014 (4)
2011 (4)
2010 (4)
2013 (3)
2004 (3)
2026 (3)
2017 (3)
2012 (2)
2008 (2)
2016 (2)
2006 (1)
2005 (1)
2003 (1)

Lab affiliation

Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (2)
Shanghai Hoogen Biotechnology Co., Ltd. (2)
UMS Biosit - CNRS 3480 - Inserm 018 Campus de Beaulieu - Bâtiment. 24 - CS2407 263 Avenue du Général Leclerc 35042 RENNES CEDEX FRANCE (2)
1Gavin Herbert Eye Institute –Brunson Center for Translational Vision Research, Department of Ophthalmology and Visual Sciences, University of California Irvine, Irvine, CA 92697, USA 2Department of Physiology and Biophysics, University of California Irvine, Irvine, CA 92697, USA 3Department of Chemistry, University of California Irvine, Irvine, CA 92697, USA 4Department of Molecular Biology and Biochemistry, University of California Irvine, Irvine, CA 92697, USA (1)
CECAD Research Cluster, University of Cologne, Joseph-Stelzmann Str. 26, 50931 Köln, Germany. Center for Molecular Medicine Cologne (CMMC), University of Cologne, Robert-Koch Str. 21, 50931 Köln, Germany Institute of Clinical Sciences, Imperial College London, Hammersmith Hospital Campus, Du Cane Road, London W12 0HS, UK (1)
Calico Life Sciences (1)
Center For Viticultutre and Small Fruits Florida A&M University Tallahassee, FL 32317 (1)
Chemical & Biomolecular Engineering, Johns Hopkins University (1)
Department of Biomedical Sciences Rue du Bugnon 7 1005 Lausanne Switzerland (1)
Department of Chemistry & Chemical Biology, Northeastern University (1)
Department of Chemistry, Brandeis University, US (1)
Department of Fundamental Neurosciences, Rue du Bugnon 9, 1005, Lausanne (1)
Department of Microbiology, The University of Hong Kong, Hong Kong, SAR, China (1)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Centre de recherche Agora Rue du Bugnon 25A CH-1011 Lausanne Switzerland (1)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Office B25A/04/94 Rue du Bugnon 25a, CH-1005 Lausanne (1)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Rue du Bugnon 25a, CH-1005 Lausanne (1)
Génétique Quantitative et Évolution – Le Moulon PAPPSO INRA – Université Paris-Sud – CNRS – AgroParisTech Ferme du Moulon 91190 Gif-sur-Yvette France (1)
INRAE, UR1268 BIA, F-44316 Nantes, France (1)
Institut National de la Santé et de la Recherche Médicale (INSERM), U1048, Institut of Cardiovascular and Metabolic Disease, Toulouse, France. Université Toulouse III Paul-Sabatier, Toulouse, France. (1)
Institut Pasteur - CNRS USR 2000 Mass Spectrometry for Biology Unit 28, rue du Dr. Roux 75 015 Paris (1)
Institute of Virology, Technical University Munich (1)
Key Laboratory of Aquaculture in South China Sea for Aquatic Economic Animal of Guangdong Higher Education Institutes, Laboratory of Marine Pearl Culture (1)
Key Laboratory of Cellular Function and Pharmacology of Jilin Province, Yanbian University, (1)
Laboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U1163, Necker Hospital for Sick Children, Paris, France; University of Paris, Imagine Institute, Paris, France; St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY, USA; Department of Pediatrics, Necker Hospital for Sick Children, AP-HP, Paris, France; Howard Hughes Medical Institute, New York, NY, USA (1)
Laboratory of Neuroimmunology, Neuroscience Research Centre, Department of Clinical Neurosciences, Lausanne University Hospital (CHUV) and University of Lausanne, Lausanne, Switzerland Service of Neurology, Department of Clinical Neurosciences, Lausanne University Hospital (CHUV) and University of Lausanne, Lausanne, Switzerland (1)
Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V., Otto-Hahn-Str. 6b, 44227 Dortmund, Germany (1)
Mass Spectrometry for Biology Unit Department of Structural Biology and Chemistry Institut Pasteur, CNRS USR 2000 28 rue du Docteur Roux, 75015 Paris, France (1)
Medizinisches Proteom-Center, Medical Faculty, Ruhr-University Bochum, 44801 Bochum, Germany; 44801 Bochum, Germany (1)
Professor, Microbiology, Immunology, and Pathology Mycobacteria Research Laboratories Scientific Director, Rocky Mountain Regional Biocontainment Laboratory Editor-in-chief, BMC Mycobacteria (1)
Proteomics & Metabolomics Facility MRC London Institute of Medical Sciences, Du Cane Road, London W12 0NN, United Kingdom (1)

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Blanc Du Bios Proteome - Proteome Profile of American Hybrid Grape cv

Blanc Du bois grapes are gaining popularity in the South eastern US due to its distinctive flavor and disease tolerance characteristics. Berry composition at harvest is a major contributing factor of wine quality. Blanc Du bois grapes are harvested from EL-38 and EL-39 stages depending on the style ...

ORGANISM(S): Vitis vinifera (Grape)

2018-04-09 | PXD004157 | Pride

RNA-DNA DIFFERENCES IN NASCENT RNA

RNA sequences are expected to be identical to their corresponding DNA sequences. Advances in technologies have enabled deep sequencing of nucleic acids that uncovered exceptions to the one-to-one relationship between DNA and RNA sequences. Previously in human cells, post-transcriptional RNA editin...

ORGANISM(S): Homo sapiens

2014-02-21 | E-GEOD-39878 | biostudies-arrayexpress

Scoring information integration with statistical quality control enhanced cross-run analysis of data-independent acquisition proteomics data.

Not available

S-EPMC12635196 | biostudies-literature

Is pelvic floor loading in female runners associated with post-run changes in pelvic floor morphometry or function?

Not available

S-EPMC12415321 | biostudies-literature

Transcription profiling by array of adipose samples from LDLR-/- mice to study response to anti-diabetic drug and dietary lifestyle interventions

Lean male mice were fed a high fat diet (HFD, lard 24% w/w) for 16 weeks. At 9 weeks, when all hallmarks of prediabetes were established, groups of mice were treated with drug (rosiglitazone, pioglitazone, T0901317, or salicylate) for another 7 weeks together with the high fat diet. An additional gr...

ORGANISM(S): Mus musculus

2014-05-14 | E-GEOD-57659 | biostudies-arrayexpress

ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis

Genes are pleiotropic and getting a better knowledge of their function requires a comprehensive characterization of their mutants. Here, we generated multi-level data combining phenomic, proteomic and metabolomic acquisitions from plasma and liver tissues of two C57BL/6 N mouse models lacking the...

2021-09-01 | MTBLS1903 | MetaboLights

Akkermansia Muciniphila Alleviates Severe Acute Pancreatitis via Amuc1409-Ube2k-Foxp3 Axis in Regulatory T Cells.

Not available

S-EPMC12376690 | biostudies-literature

Differential Expression of NF-kB target genes in MALT lymphoma with and without chromosome translocation

MALT lymphoma is characterized by t(11;18)(q21;q21)/API2-MALT1, t(1;14)(p22;q32)/BCL10-IGH and t(14;18)(q32;q21)/IGH-MALT1, which commonly activate the NF-κB pathway. Gastric MALT lymphomas harboring such translocation do not respond to H. pylori eradication, while those without translocation can be...

ORGANISM(S): Homo sapiens

2010-05-31 | E-GEOD-18736 | biostudies-arrayexpress

Maternal Body Mass Index Is Associated with Profile Variation in Circulating MicroRNAs at First Trimester of Pregnancy.

Not available

S-EPMC9313007 | biostudies-literature

MiR-191 inhibit angiogenesis after acute ischemic stroke targeting VEZF1.

Not available

S-EPMC6535071 | biostudies-literature

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197 Results

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