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ProteomicsHigh conservation of translationally significant RNA editing sites in hyper-editing ferns implies they are not selectively neutral
RNA editing is essential for processing transcripts in plant chloroplasts and mitochondria. Levels of RNA editing vary between lineages, but some hornworts, lycophytes and ferns have an extraordinary abundance of RNA editing. A feature of ‘hyper-editing’ species is the prevalence of RNA editing even...
ORGANISM(S): Marsilea mutica 
2025-10-27 | PXD065205 | Pride
Rna editing Masrsieal 
ProteomicsIdentification of DNA methylation reader proteins of Arabidopsis thaliana by DNA-affinity pull-down MS and their characterization by IP-MS.
In plants, cytosine DNA methylation (mC) is largely associated with transcriptional repression of transposable elements, but it can also be found in the body of expressed genes, referred to as gene body methylation (GbM). GbM is correlated with ubiquitously expressed genes, however its function, or ...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2025-06-09 | PXD050777 | Pride
Mbd Arabidopsis Plants Dna affinity pull-down Dna methylation Epigenetics Suvh Ap Lc-ms/ms 
ProteomicsA MYC2, MYC3, MYC4-dependent transcription factor network regulates touch responses in plants
Plants are continuously exposed to environmental triggers, including mechanical stimulation. Our results demonstrate that jasmonic acid (JA)-signalling plays a key role in very early gene expression changes, well before it leads to touch-induced developmental changes. We show that the JA-activated t...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2019-10-29 | PXD014008 | Pride
Touch respose Arabidopsis Myc2 
ProteomicsTaestivum - Embryo, LFQ (Caoetal,newphytol2022)
abundance based on LFQ, Interaction consistency score: 0.3, Coverage: 0
ORGANISM(S): 4565 
2022-00-00 | 802453405 | PAXDB
ProteomicsTaestivum - Pericarp, LFQ (Caoetal,newphytol2022)
abundance based on LFQ, Interaction consistency score: 0.8, Coverage: 0
ORGANISM(S): 4565 
2022-00-00 | 2312475638 | PAXDB
ProteomicsTaestivum - Endosperm, LFQ (Caoetal,newphytol2022)
abundance based on LFQ, Interaction consistency score: 2.0, Coverage: 0
ORGANISM(S): 4565 
2022-00-00 | 3866569555 | PAXDB
TranscriptomicsExpression data of Col:LUC Arabidopsis treated with antimycin A (AA) in the presence or absence of a synthetic auxin analogue
Mitochondrial stress stimuli such as AA caused a transient suppression of auxin signaling and conversely, auxin treatment represses a part of the response to AA treatment. Expression data of Col:LUC Arabidopsis treated with antimycin A (AA) in the presence or absence of a synthetic auxin analogue To...
ORGANISM(S): Arabidopsis thaliana 
2014-06-01 | E-GEOD-57140 | biostudies-arrayexpress
MetabolomicsHost-gut microbiota interactions shape parasite infections in farmed Atlantic salmon

Animals and their associated microbiota share long evolutionary histories. However, it is not always clear how host genotype and microbiota interact to affect phenotype. We applied a hologenomic approach to explore how host-microbiota interactions shape lifetime growth and parasite infection in f...

2024-01-24 | MTBLS8575 | MetaboLights
UnknownClinical complexity and impact of the ABC (Atrial fibrillation Better Care) pathway in patients with atrial fibrillation: a report from the ESC-EHRA EURObservational Research Programme in AF General Long-Term Registry.
Not available
S-EPMC9440492 | biostudies-literature
MetabolomicsMetabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial D - fermented seaweed open water-dose response)

Testing the effect of seaweed as a novel cost-efficient feed source for Atlantic salmon feed. Fermentation of novel raw materials for fish feed is a new practice with little prior experience of direct relevance to aquaculture and fish farming. In Trial D, an alternative marine compound is include...

2023-06-13 | MTBLS6733 | MetaboLights
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