Dunn S S - OmicsDI

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Unknown (2744)
Metabolomics (75)
Proteomics (56)
Transcriptomics (55)
Genomics (39)
Models (22)
Other (1)

Organisms

Homo sapiens (70)
Saccharomyces cerevisiae (38)
Mus musculus (14)
Drosophila melanogaster (3)
Anopheles gambiae (2)
Arabidopsis thaliana (2)
Halobacterium salinarum NRC-1 (2)
Leishmania mexicana MHOM/GT/2001/U1103 (2)
Solanum pennellii (1)
Saccharomyces bayanus x Saccharomyces cerevisiae (1)
Porphyromonas gingivalis (1)
Aedes aegypti (1)
Mycobacterium tuberculosis H37Rv (1)
Gallus gallus (1)
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Homo (1)
Influenza A virus (1)
Influenza A virus (A/WSN/1933(H1N1)) (1)
Manduca sexta (1)
Mus (1)
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Trichoderma asperellum CBS 433.97 (1)
Trichoderma atroviride IMI 206040 (1)
Trichoderma guizhouense (1)
Trichoderma parepimyces (1)
Trichoderma reesei QM6a (1)
Trichoderma virens Gv29-8 (1)

Organisms

Homo sapiens (10)
Saccharomyces cerevisiae (8)
Schizosaccharomyces pombe (1)

Repository

MetaboLights (74)
biostudies-arrayexpress (65)
pride (50)
ENA (23)
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jPOST (1)

Tissue

Cell culture (9)
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Fibroblast (2)
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T cell (2)
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Blood (1)
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Disease

Cervix carcinoma (2)
Normal (1)
Not Available (1)
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COVID-19 (1)
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Human cytomegalovirus infection (1)
Influenza (1)
Leishmaniasis (1)
Malignant neoplasm of ovary (1)
Meningioma (1)
Non-small cell lung carcinoma (1)
Periodontitis (1)
Wiskott-Aldrich syndrome (1)

Technology Type

Mass spectrometry (63)
Mass Spectrometry (50)
Shotgun proteomics (18)
Affinity purification coupled with mass spectrometry proteomics (11)
Bottom-up proteomics (11)
NMR spectroscopy (9)
Gel-based experiment (6)
Mass spectrometry assay (4)
SWATH MS (3)
Data-dependent acquisition (2)
Illumina HiSeq 2500 (ILLUMINA), AB SOLiD System (ABI_SOLID) (1)
Affinity proteomics (1)
All-ion fragmentation (1)
Data-independent acquisition (1)
Immunopeptidomics (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (20)
Liquid Chromatography MS - positive - reverse phase (19)
Liquid Chromatography MS - positive - hilic (7)
Liquid Chromatography MS - negative - hilic (6)
Nuclear Magnetic Resonance (NMR) - (5)
Bruker (4)
Illumina HiSeq 2500 (3)
Illumina HiSeq 2000 (3)
Q Exactive (3)
GC-MS (3)
Gas Chromatography MS - (3)
Gas Chromatography MS - Positive (GC-MS (Positive)) (3)
Gas Chromatography MS - positive (3)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (3)
Liquid Chromatography MS - negative (3)
Liquid Chromatography MS - positive (3)
Exactive (Thermo Scientific) (2)
LECO Pegasus 4D (2)
Liquid Chromatography MS - (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS – negative - reverse phase (2)
Liquid Chromatography Tandem MS (LC-MS/MS) (2)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
Orbitrap Astral (1)
Instrument (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
5975C Series GC/MSD (Agilent) (1)
6550 Q-TOF LC/MS (Agilent) (1)

Publication Date

2005 (23)
2023 (19)
2021 (16)
2024 (13)
2022 (13)
2020 (12)
2015 (12)
2025 (12)
2019 (11)
2011 (11)
2026 (9)
2017 (9)
2013 (9)
2016 (8)
2014 (7)
2012 (7)
2018 (7)
2010 (6)
2007 (4)
2006 (4)
2008 (3)
2009 (2)

UNIPROT ID/AC

P31688 (14)
P32861 (14)
P33401 (14)
P37012 (14)
Q00764 (14)
P00360 (2)
P00549 (2)
P00560 (2)
P00924 (2)
P00950 (2)
P04806 (2)
P06169 (2)
P12709 (2)
P14540 (2)
P16861 (2)
P16862 (2)
A5YWB0 (1)
O13525 (1)
P00044 (1)
P00045 (1)
P00127 (1)
P00128 (1)
P00163 (1)
P00175 (1)
P00330 (1)
P00331 (1)
P00358 (1)
P00359 (1)
P00401 (1)
P00410 (1)

CHEBI ID

CHEBI:16027 (41)
CHEBI:15343 (21)
CHEBI:15361 (21)
CHEBI:15422 (21)
CHEBI:15846 (21)
CHEBI:16001 (21)
CHEBI:16108 (21)
CHEBI:16761 (21)
CHEBI:16908 (21)
CHEBI:17794 (21)
CHEBI:17835 (21)
CHEBI:18021 (21)
CHEBI:16236 (20)
CHEBI:16551 (20)
CHEBI:17754 (20)
CHEBI:28602 (20)
CHEBI:29052 (20)
CHEBI:30031 (20)
CHEBI:16084 (19)
CHEBI:17665 (19)
CHEBI:28013 (19)
CHEBI:4167 (19)
CHEBI:15978 (16)
CHEBI:16077 (14)
CHEBI:17659 (14)
CHEBI:18066 (14)
CHEBI:18283 (14)
CHEBI:30089 (13)
CHEBI:46398 (13)
CHEBI:28087 (7)

Metabolite Name

Hypoxanthine (17)
L-Phenylalanine (17)
Uracil (17)
L-Tyrosine (16)
Adenine (15)
Citric acid (15)
L-Leucine (15)
Taurine (15)
Uridine (15)
L-Arginine (14)
L-Tryptophan (14)
Adenosine (13)
Choline (13)
Creatine (13)
Creatinine (13)
Inosine (13)
L-Glutamine (13)
L-Histidine (13)
L-Isoleucine (13)
L-Methionine (13)
L-Proline (13)
L-Valine (13)
Sucrose (13)
Fumaric acid (12)
Glycine (12)
L-Threonine (12)
Putrescine (12)
Succinic acid (12)
Xanthine (12)
Pyruvic acid (11)

First Public Date

2015 (5)
2013 (5)
2018 (4)
2017 (3)
2026 (2)
2019 (2)
2020 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (20)
Computational model (1)

Lab affiliation

Sir William Dunn School of Pathology, University of Oxford (6)
Sir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford OX1 3RE, UK (2)
Sir William Dunn School of Pathology, University of Oxford, UK (2)
Associate Professor of Biochemistry Associate Professor of Cell Biology Duke University School of Medicine (1)
Biochemistry and Molecular Biology, Munger Lab, University of Rochester, USA (1)
Bioscience Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia (1)
Cancer Research UK University of Cambridge Li Ka Shing Centre Robinson Way Cambridge, CB2 0RE (1)
Center for Neuroscience and Cell Biology of theUniversity of Coimbra (1)
Chair in Infection and Global Health, Department of Infection Biology, Institute of Infection and Global Health, University of Liverpool, (1)
Department of Biochemistry, The University of Utah, Salt Lake City, UT, USA Howard Hughes Medical Institute, University of Utah, Salt Lake City, UT, USA (1)
Department of Laboratory Medicine, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology (1)
Department of Obstetrics and Gynecology, Inova Fairfax Medical Campus, Inova Health System (1)
Department of Urology, Department of Biochemistry and Molecular Biology, Cancer Research Institute, SUNY Upstate Medical University, 750 E. Adams St., Syracuse, NY 13210, USA (1)
Department of Urology, Department of Biochemistry and Molecular Biology, Cancer Research Institute, SUNY Upstate Medical University, 750 E. Adams St., Syracuse, NY 13210, USA (1)
Department of intracellular signalling and transport, Institute of Cytology, Russian Academy of Sciences, St. Petersburg, Russia (1)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Rue du Bugnon 25a, CH-1005 Lausanne (1)
Director Institute of Translational and Stratified Medicine, Plymouth University Peninsula Schools of Medicine and Dentistry, UK (1)
Director Institute of Translational and Stratified Medicine, Plymouth University Peninsula Schools of Medicine and Dentistry, UK. (1)
Evolutionary Genomics Section, Globe Institute, University of Copenhagen (1)
Head Proteomics Core Facility Medical University of Vienna Clinical Department of Laboratory Medicine (1)
Head of Department (Pathology), University of Liege, Liege, Belgium (1)
Jiangsu Academy of Agricultural Sciences (1)
John van Geest Cancer Research Centre, Nottingham Trent University (1)
Plymouth University Peninsula Schools of Medicine and Dentistry (1)
Professor in Molecular Genetics and Microbiology Duke University School of Medicine Durham, NC (1)
Regents Professor Department of Entomology & Plant Pathology Oklahoma State University, Stillwater, OK 74078 Telephone: 405-744-9400 (1)
Royal Society University Research Fellow and Group Leader Research Lecturer, Sir William Dunn School of Pathology, University of Oxford, Fellow by special election, St. Edmund Hall, University of Oxford (1)
Royal Society University Research Fellow, Group Leader and Research Lecturer at Sir William Dunn School of Pathology (University of Oxford); Fellow by special election at St. Edmund Hall (University of Oxford) (1)
Saha Cardiovascular Research Center and Saha Aortic Center Department of Physiology University of Kentucky Lexington, KY USA (1)
School of Biomedical Sciences, University of Plymouth (1)

IsPrivate

False (22)

Model Flag

Non Kinetic (1)

Submitter Keywords

FAIR-AIML (1)
Machine Learning Model (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (27)
ChIP-seq (10)
Comparative genomic hybridization by array (9)
RNA-seq of coding RNA (8)
RNA-seq of coding RNA from single cells (3)
Other (2)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
Cell line - High-throughput sequencing (1)
Genotyping by array (1)
Genotyping by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (282)
2021 (264)
2023 (261)
2024 (228)
2025 (222)
2020 (218)
2019 (188)
2018 (164)
2015 (149)
2016 (145)
2017 (119)
2014 (93)
2012 (80)
2013 (77)
2011 (55)
2009 (55)
2010 (40)
2026 (39)
2008 (34)
2007 (28)
2006 (23)
2005 (12)
2003 (8)
2002 (7)
2004 (5)
2001 (5)
2000 (2)
1999 (2)
1998 (2)
1997 (2)

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The telomere-to-telomere (T2T) genome of Peucedanum praeruptorum Dunn provides insights into the genome evolution and coumarin biosynthesis

BACKGROUND: Traditional Chinese medicine has used Peucedanum praeruptorum Dunn (Apiaceae) for a long time. Various coumarins, including the significant root constituents Praeruptorin (A-E), are the active constituents of the dried roots of P. praeruptorum. Previous trans...

2024-04-02 | MTBLS8679 | MetaboLights

Evolution of S. cerevisiae - S. bayanus Interspecific Hybrids

Hybrid progeny can enjoy increased fitness and stress tolerance relative to their ancestral species, a phenomenon known as hybrid vigor. Though this phenomenon has been documented throughout the Eukarya, evolution of hybrid populations has yet to be explored experimentally in the lab. To fill this k...

ORGANISM(S): Saccharomyces bayanus x Saccharomyces cerevisiae

2012-07-31 | E-GEOD-24479 | biostudies-arrayexpress

Antimutagenic components in Spatholobus suberectus Dunn against N-methyl-N-nitrosourea.

Not available

S-EPMC6907206 | biostudies-literature

Comparison between modified Dunn procedure and in situ fixation for severe stable slipped capital femoral epiphysis.

Not available

S-EPMC5901520 | biostudies-literature

Expression data from non-metastatic and metastatic osteosarcoma cells

Osteosarcoma (OS) is the malignant bone tumor with a high tendency to metastasize to the lung, where the molecular mechanisms are unclear. The mouse OS cell line LM8 has been isolated originally from the Dunn OS cell line by in vivo selection as a subline with a high metastatic potential to the lung...

ORGANISM(S): Mus musculus

2011-03-04 | E-GEOD-26648 | biostudies-arrayexpress

Saccharomyces pastorianus strains comparison

Saccharomyces pastorianus is the yeast used to make lager beer; it is known to be an interspecific hybrid formed by the fusion between S. cerevisiae and S. bayanus genomes. This data set queries 17 S. pastorianus strains, collected at various times over the last 125 years from various breweries loc...

ORGANISM(S): Saccharomyces cerevisiae

2008-07-22 | E-GEOD-12177 | biostudies-arrayexpress

A Signaling Lipid Associated with Alzheimerâ€™s Disease Promotes Mitochondrial Dysfunction

Fundamental changes in the composition and distribution of lipids within the brain are believed to contribute to the cognitive decline associated with Alzheimerâ€™s disease (AD). The mechanisms by which these changes in lipid composition affect cellular function and ultimately cognition are not well...

ORGANISM(S): Saccharomyces cerevisiae

2016-01-21 | E-GEOD-40814 | biostudies-arrayexpress

R-loop formation during S phase is restricted by PrimPol-mediated repriming.

Not available

S-EPMC6356060 | biostudies-literature

Fail-safe transcriptional termination for protein-coding genes in S. cerevisiae.

Not available

S-EPMC2779338 | biostudies-literature

Development of reverse genetics system for Guanarito virus: substitution of E1497K in the L protein of Guanarito virus S-26764 strain changes plaque phenotype and growth kinetics.

Not available

S-EPMC10878084 | biostudies-literature