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ProteomicsEvaluation of the potential risk of Easy-nLC 1200 in phosphoproteomics
Liquid chromatography-mass spectrometry (LC-MS) is a major tool for large scale qualitative and/or quantitative analysis of protein phosphorylation in cells or tissues. Performance of LC is pivotal for the success of phosphoprotemics in both sensitivity and reproducibility. Here we report that the w...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) Homo sapiens (Human) 
2023-03-10 | PXD034396 | Pride
Phosphoproteomics Lc-ms Phosphorylation 
UnknownEvaluation of the Potential Risk of Analyzing Phosphopeptides with Easy-nLC 1200-Coupled Mass Spectrometers.
Not available
S-EPMC9798504 | biostudies-literature
ProteomicsGeneration of the HCC spectral library covering more than 10,000 protein groups
Peptides of HCC cell lines and tumour tissues were fractionated by Hp-RP to eight fractions and repeated analysed three times by the LC-MS/MS detection system consisted of the EASY-nLC 1000 coupled to the Q-Exactive HF mass spectrometer using data dependent acquisition mode.
ORGANISM(S): Homo sapiens (Human) 
2022-11-11 | PXD035028 | Pride
Hcc proteome 
MetabolomicsComprehensive Untargeted Metabolomics Dataset of Saccharomyces cerevisiae Aging-Associated Mutants and Yeast–Host Interactions in Drosophila melanogaster

Aging is a complex biological process influenced by genetic factors, environmental conditions, and interactions between organisms and their associated microbes. The budding yeast Saccharomyces cerevisiae and the fruit fly Drosophila melanogaster provide complementary model systems for investigati...

2026-09-04 | MTBLS15555 | MetaboLights
MetabolomicsSelective profiling of translationally active tRNAs and their dynamics under stress

During translation, transfer RNAs (tRNAs) deliver specific amino acids to the ribosome in a coordinated manner with the sequence encoded by the mRNA. Despite their central role in protein synthesis, the precise contribution of tRNAs to the modulation of translation remains poorly understood, prim...

2026-06-25 | MTBLS12806 | MetaboLights
ProteomicsUnravelling the molecular mechanism underlying drought stress response in chickpea via integrated multi-omics analysis
This study was aimed to deal with a comparative proteome analysis of the two chickpea genotypes with contrasting response to drought stress, ICC 4958 (drought-tolerant, DT) and ICC 1882 (drought-sensitive, DS). Proteins were extracted from the root tissues collected from the control and drought stre...
ORGANISM(S): Cicer arietinum (Chickpea) (Garbanzo) 
2023-07-20 | PXD041434 | Pride
Chickpea  drought  proteome  nanolc-ms/ms 
ProteomicsLabeled quantitative proteomics dataset of optogenetics induced axon regeneration
This labeled quantitative proteomics dataset was collected from a transgenic channel rhodopsin mouse model (Chr2) subjected to light stimulation after traumatic optic nerve crush (ONC) was performed. Mouse models expressing channel rhodopsin were subjected to therapeutic light stimulation promoting ...
ORGANISM(S): Mus musculus (Mouse) 
2022-08-12 | PXD032788 | Pride
Rhythmic light stimulation Quantitative proteome Axon regeneration Optogenetic stimulation 
ProteomicsProteome of extracellular vesicles derived from MCF-10A and MDA-MB-231 cells
Proteins in the EVs of MCF-10A and MDA-MB-231 cells were determined by mass spectrometry at Beijing Proteome Research Center using a LC-MS/MS platform comprising a nanoflow high-performance liquid chromatograph (HPLC) instrument (EASY-nLC 1000 nanoflow LC, Thermo Scientific, USA) coupled with a LTQ ...
ORGANISM(S): Homo sapiens (Human) 
2025-10-10 | PXD069253 | Pride
Extracellular vesicles Ddah1 
ProteomicsAnti-virus infection effect of Houyanqing（HYQ） oral liquid in ICR mice
Orbitrap Fusion LC/MS analyses were performed on an Easy-nLC 1000 liquid chromatography system coupled to an Orbitrap Fusion via a naon-electrospray ion source
ORGANISM(S): Mus Musculus 
PXD021468 |
ProteomicsProteomic analysis of distinct regions of human carotid atherosclerotic plaques
Protein profiles were determined from different distinct regions of human atherosclerotic plaques, including: internal control, fatty streak, plaque shoulder, plaque centre, and fibrous cap. Protein extracts from all 5 regions, from 3 men and 3 women, were separated by two-dimensional gel electropho...
ORGANISM(S): Homo sapiens (Human) 
2016-05-24 | PXD003930 | Pride
Human Carotid artery Ms/ms Peptide mass fingerprinting Atherosclerosis 
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