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ProteomicsEvaluation of the potential risk of Easy-nLC 1200 in phosphoproteomics
Liquid chromatography-mass spectrometry (LC-MS) is a major tool for large scale qualitative and/or quantitative analysis of protein phosphorylation in cells or tissues. Performance of LC is pivotal for the success of phosphoprotemics in both sensitivity and reproducibility. Here we report that the w...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) Homo sapiens (Human) 
2023-03-10 | PXD034396 | Pride
Phosphoproteomics Lc-ms Phosphorylation 
UnknownEvaluation of the Potential Risk of Analyzing Phosphopeptides with Easy-nLC 1200-Coupled Mass Spectrometers.
Not available
S-EPMC9798504 | biostudies-literature
MetabolomicsFIRST-seq: a nanopore-based cDNA sequencing platform for RNA modification and structure profiling

This repository contains the LC-MS/MS raw data for the RNA quantifications obtained from in vivo DMS probed RNAs from E.coli and MDA-MB231 cell lines.

2026-04-26 | MTBLS14382 | MetaboLights
MetabolomicsComprehensive Untargeted Metabolomics Dataset of Saccharomyces cerevisiae Aging-Associated Mutants and Yeast–Host Interactions in Drosophila melanogaster

Aging is a complex biological process influenced by genetic factors, environmental conditions, and interactions between organisms and their associated microbes. The budding yeast Saccharomyces cerevisiae and the fruit fly Drosophila melanogaster provide complementary model systems for investigati...

2026-09-04 | MTBLS15555 | MetaboLights
ProteomicsComprehensive Endoplasmic Reticulum Proteomics Analysis in Chickpea (Cicer arietinum L.): Unveiling Cellular Secrets
Endoplasmic reticulum is a considerable network of intracellular network. Major functions of the ER are a protein folding, proteosynthesis, and post-transcriptional modifications, lipid anabolism and sorting of the protein. ER isolation is a very challenging because ER biochemical properties are mos...
ORGANISM(S): Cicer arietinum (Chickpea) (Garbanzo) 
2025-01-15 | PXD056907 | Pride
Dehydration stress Endoplasmic reticulum Chickpea Easy-nlc lc-ms/ms 
ProteomicsApple snail perivitelline fluid LC-MS/MS
Proteins were extracted from the perivitelline fluid of the apple snail Pomacea maculata eggs. And then proteins were seperated on SDS-PAGE gel and analyzed by LTQ-Orbitrap Elite coupled to an Easy-nLC.
ORGANISM(S): Pomacea maculata 
2017-09-25 | PXD006718 | Pride
Apple snail Egg perivitelline fluid Lc-ms/ms 
ProteomicsProteomic characterization of bacteriophage peptides from mastitis producer Staphylococcus aureus by LC-ESI-MS/MS and their bacteriophage phylogenomic analysis
The present work describes LC-ESI-MS/MS analyses of tryptic digestion peptides from phages that infect Staphylococcus aureus-causing mastitis, and isolated from dairy products. A total of 1935 non-redundant peptides belonging to 1282 proteins were identified and analyzed. Among them, 80 staphylococc...
ORGANISM(S): Staphylococcus aureus 
2021-03-25 | PXD023530 | Pride
Pathogen detection  lc-esi-ms/ms  proteomics  mass spectrometry  phage peptide biomarker 
ProteomicsBarnacle cyprid cement gland LC-MS/MS
Proteins were extracted from the cement glands of the cypird barnacle Megabalanus volcano. And thenproteins were subjected to in-solution digestion and analyzed by LTQ-Orbitrap Elite coupled to an Easy-nLC.
ORGANISM(S): Megabalanus volcano 
2021-09-08 | PXD012779 | Pride
Barnacle，cyprid，cement gland 
ProteomicsIdentification of PPARα-associated proteins in mouse macrophages by immunoprecipitation coupled with Q Exactive LC-MS/MS
This PRIDE project contains raw and processed LC-MS/MS data generated from immunoprecipitation–mass spectrometry (IP-MS) experiments designed to identify PPARα-associated proteins in mouse bone marrow-derived macrophages (BMDMs). In this study, His-tagged PPARα was overexpressed in BMDMs and immunop...
ORGANISM(S): Mus musculus (Mouse) 
2026-09-09 | PXD077311 | Pride
Pparα  mus musculus  bone marrow-derived macrophages  affinity purification-mass spectrometry  immunoprecipitation 
ProteomicsSARS-CoV-2 infection of human lung epithelial cells induces TMPRSS-mediated acute fibrin deposition
Twenty microliter aliquots of BALF samples were dissolved in SDS-sample buffer and applied onto a 4-12% Nupage gel with MOPs running buffer. The run stopped after the samples migrated approximately ¼ distance into the gel. Each lane of the gel was sliced into smaller pieces, and subjected to destai...
ORGANISM(S): Homo sapiens (Human) 
2023-10-24 | PXD045119 | Pride
Nhbe cells Fibrin deposit Sars-cov-2 infection Bronchoalveolar lavage 
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