Ebv - OmicsDI

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Transcriptomics (4036)
Unknown (3985)
Genomics (1156)
Proteomics (111)
Other (57)
Methylation profiling (23)
Genomic (7)
Metabolomics (5)
Clinical (3)
Multiomics (2)

Organisms

Homo sapiens (2291)
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Oryza sativa (18)
Streptococcus pneumoniae D39 (16)
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Organisms

Homo sapiens (598)
human gammaherpesvirus 4 (35)
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Human gammaherpesvirus 8 (1)
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viral metagenome (1)
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Repository

biostudies-arrayexpress (3763)
ENA (892)
geo (582)
pride (60)
EGA (52)
MassIVE (21)
dbGaP (7)
jPOST (5)
MetaboLights (5)
iProX (4)
EVA (3)
ExpressionAtlas (1)
PanoramaPublic (1)

Tissue

B cell (31)
Cell culture (21)
Blood (9)
Blood plasma (3)
Blood cell (3)
Nasopharyngeal epithelial cell (2)
Leukocyte (2)
Blood serum (2)
Cell suspension culture (2)
Dendritic cell (2)
Fibroblast (2)
Monocyte (2)
EBV-LCL cell (1)
Burkitt lymphoma cell (1)
Cerebral cortex glial cell (1)
Nasopharyngeal carcinoma cell (1)
B-lymphoblastoma cell (1)
RAJI cell (1)
Lymphocyte (1)
Peripheral blood mononuclear cell (1)
Lymphocyte of B lineage (1)
Lymph node (1)
Early embryonic cell (1)
Bone marrow (1)
Macrophage (1)
Brain (1)
Bronchoalveolar lavage (1)
Embryo (1)
Obsolete lymphoblast (1)
Spleen (1)

Disease

Normal (6)
Breast cancer (4)
Multiple sclerosis (4)
Lymphoma (3)
Burkitt lymphoma (2)
Disease free (2)
Testicular seminoma (1)
CLL (1)
Arrhythmias and right ventricular dysfunction (1)
GIP-dependent Cushing's syndrome (1)
HPV positive (1)
Osteosarcoma subtype fibroblastic (1)
High grade glioblastoma (1)
Cocaine addiction (1)
Primary effusion lymphoma (PEL) (1)
DNA damage (1)
Acute lymphocytic leukemia (1)
Anaplastic large cell lymphoma has DiseaseStaging II (1)
Extranodal NK/T-Cell Lymphoma derived cell line (1)
Uninfected (1)
Schizophrenia (1)
Primary tumor (1)
Leukemia (1)
Renal cell carcinoma (1)
Glioblastoma (1)
Prostate carcinoma (1)
Nodal peripheral T-cell Lymphoma (1)
Burkitt Lymphoma (1)
Lymphoma (1)
Epstein-Barr Virus Infections (1)

Technology Type

Mass Spectrometry (60)
Shotgun proteomics (32)
Bottom-up proteomics (15)
Affinity purification coupled with mass spectrometry proteomics (11)
Data-dependent acquisition (5)
Mass spectrometry (3)
Data-independent acquisition (3)
Gel-based experiment (3)
Illumina HiSeq 2000 (2)
Immunopeptidomics (2)
NextSeq 500, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2500, ILLUMINA (1)
HiSeq X Ten (1)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500 (1)
NMR spectroscopy (1)
Mass spectrometry assay (1)
SWATH MS (1)
Top-down proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (19)
Illumina HiSeq 2500 (16)
Illumina HiSeq 2000 (15)
Illumina HiSeq 1500 (9)
Illumina HiSeq 4000 (9)
NextSeq 500 (8)
Illumina Genome Analyzer II (2)
Illumina NovaSeq X (2)
Illumina MiSeq (2)
NextSeq 550 (2)
10X Genomics Single Cell, V3.1 (1)
Agilent 2100 Bioanalyzer, Applied Biosystems 7900HT Sequence Detection System, Illumina TruSeq Small RNA Sample Preparation Kit (1)
RNeasy mini Kit, Ribo-Zero Human/Mouse/Rat kit (1)
Agilent Surescan High Resolution DNA microarray Scanner (1)
Beckman Coulter MoFlo Astrios (1)
Agilent G2565CA microarray scanner (1)
Solexa 2G Genome Analyzer (1)
BD FACSAria III (1)
Illumina iScan (1)
Agilent 2100 Bioanalyzer (1)
Illumina Genome Analyzer IIx (1)
G2565BA DNA microarray scanner [Agilent] (1)
GenePix 4000B [Axon Instruments] (1)
TruSeq (Illumina, Novogene, Genomic Centre Cambridge, CB4 0FW, UK.) (1)
NanoDrop spectrophotometer and the Agilent 2100 Bioanalyzer (1)
Histopaque-1077,FACSAria Fusion Sorter,Flow Cytometer (1)
NextSeq 2000 (1)
DNBSEQ-G400 (1)
MinION (1)
MassARRAY iPLEX (1)

Publication Date

2015 (663)
2010 (609)
2013 (534)
2014 (452)
2011 (450)
2012 (426)
2008 (202)
2016 (180)
2009 (156)
2007 (94)
2026 (77)
2024 (74)
2021 (73)
2025 (70)
2022 (70)
2023 (58)
2020 (53)
2019 (48)
2017 (42)
2018 (41)
2006 (28)
2005 (24)
2004 (11)
2003 (6)
2002 (2)

CHEBI ID

CHEBI:18237 (3)
CHEBI:15891 (2)
CHEBI:16344 (2)
CHEBI:27897 (2)
CHEBI:15428 (2)
CHEBI:32816 (2)
CHEBI:16449 (2)
CHEBI:17822 (2)
CHEBI:22660 (2)
CHEBI:22653 (2)
CHEBI:26986 (2)
CHEBI:28300 (2)
CHEBI:27266 (2)
CHEBI:16811 (2)
CHEBI:18257 (2)
CHEBI:26271 (2)
CHEBI:18211 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:25094 (2)
CHEBI:29016 (2)
CHEBI:27570 (2)
CHEBI:28044 (2)
CHEBI:18186 (2)
CHEBI:194544 (1)
CHEBI:16135 (1)
CHEBI:18208 (1)
CHEBI:22359 (1)
CHEBI:46171 (1)
CHEBI:73209 (1)

Metabolite Name

Isoleucine (2)
Taurine (2)
Ï«-Cyclodextrin (1)
PC O-18:1_16:0 (1)
LNAPE 22:4/N-18:0 (1)
LNAPE 16:0/N-20:0 (1)
PE O-18:0_22:4 (1)
PE O-17:1_22:6 (1)
PC O-18:0_22:6 (1)
19(R)-Hydroxy prostaglandin F2Ï« (1)
6Ï«-Prostaglandin I1 (1)
Ï«-D-Glucose-1,6-bisphosphate (1)
N1-[3-(acetylamino)-2-oxo-2H-chromen-6-yl]-4-nitrobenzamide (1)
(©I)5(6)-DiHET (1)
2-Hydroxybenzaldehyde N-(4,6-dichloro-1,3-benzothiazol-2-yl)hydrazone (1)
15(R),19(R)-Hydroxy prostaglandin F1Ï« (1)
15(R),19(R)-Hydroxy prostaglandin F2Ï« (1)
Prostaglandin F3Ï« (1)
Quercetin-3ÉÇ-D-glucoside (1)
17Ï«-Hydroxyprogesterone (1)
ÉÇ-Estradiol (1)
2-[(4,6-dichloro-1,3-benzothiazol-2-yl)thio]aniline (1)
11ÉÇ-Prostaglandin E2 (1)
Ethyl-ÉÇ-D-glucuronide (1)
(©I)9-HpODE (1)
Ethyl 4-chloro-3-[(3,5-dichloro-2-hydroxybenzylidene)amino]benzoate (1)
Ï«-Aspartylphenylalanine (1)
Ñ´-Ribono-1,4-lactone (1)
3-Aminoisobutyric Acid (1)
4-Hydroxybenzylcyanide (1)

First Public Date

2014 (134)
2025 (111)
2024 (96)
2026 (76)
2023 (76)
2021 (69)
2020 (63)
2017 (56)
2022 (43)
2019 (41)
2018 (41)
2013 (38)
2015 (33)
2016 (15)

Classification

viruses (36)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study status

No longer available (1)
Terminated (1)
Recruiting (1)

Study type

Transcription profiling by array (2674)
RNA-seq of coding RNA (441)
Unknown experiment type (127)
RNA-seq of non coding RNA (93)
Comparative genomic hybridization by array (63)
ChIP-seq (61)
Other (55)
Methylation profiling by array (45)
ChIP-chip by tiling array (36)
Transcription profiling by SAGE (33)
Transcription profiling by RT-PCR (17)
Proteomic profiling by array (17)
Transcription profiling by tiling array (16)
Cell line - High-throughput sequencing (13)
Genotyping by array (13)
Methylation profiling by high throughput sequencing (12)
RNA-seq of coding RNA from single cells (5)
RNA-seq of total RNA (5)
Human - High-throughput sequencing (4)
ChIP-chip by array (4)
High-throughput sequencing (3)
MicroRNA profiling by array (3)
Human - Single-cell sequencing (2)
Human - One-color microarray (2)
RNAi profiling by array (2)
MicroRNA profiling by high throughput sequencing (2)
ATAC-seq (2)
DNA-seq (2)
ChIP-chip by SNP array (1)
Transcription profiling by MPSS (1)

Release Date

2015 (816)
2010 (668)
2013 (616)
2014 (553)
2011 (519)
2012 (514)
2022 (452)
2021 (375)
2025 (370)
2023 (363)
2020 (325)
2024 (323)
2016 (316)
2019 (287)
2008 (232)
2018 (228)
2017 (228)
2009 (214)
2007 (120)
2006 (46)
2026 (44)
2005 (38)
2004 (27)
2003 (25)
2001 (13)
2002 (12)
1999 (10)
2000 (8)
1998 (5)
1995 (1)

Lab affiliation

Pathology and Laboratory Medicine, Genomic Medicine, Neurological and Pediatrics Institutes, Cleveland Clinic (2)
Cambridge Institute for Medical Research, Hills Road, Cambridge, CB2 0XY (2)
Quantitative Biology Center (QBiC), University of Tübingen, Germany. (1)
Department of Ophthalmology, University Medical Center Utrecht, University of Utrecht, Utrecht, Netherlands. Center for Translational Immunology, University Medical Center Utrecht, University of Utrecht, Utrecht, Netherlands. (1)
Professor of Molecular Biology, University of Dundee (1)
1Department of Hematology, Xiangya Hospital, Central South University, Changsha 410080, China 2NHC Key Laboratory of Carcinogenesis, Department of Microbiology, School of Basic Medical Science, Central South University, Changsha 410078, China (1)
Department of Pathology, The First Affiliated Hospital, Sun Yat-sen University (1)
Department of Immunology, Institute for Cell Biology, University of Tuebingen, Tuebingen, Germany (1)
School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, United Kingdom (lab head) (1)
Center for Alzheimer's and Related Dementias (CARD), National Institute on Aging and National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD, USA. (1)
Department of Pathology, Boston Children’s Hospital, Boston, MA, USA Harvard Medical School, Boston, MA, USA Precision Vaccines Program, Boston Children’s Hospital, Boston, MA, USA (1)
Neuroimmunology and MS Research, Neurology Clinic, University Hospital Zurich, University of Zurich, 8091 Zurich, Switzerland (1)
Paul J Lehner PhD FRCP FMed Sci FRS Sheila Joan Smith Professor of Immunology Wellcome Principal Fellow and Honorary Consultant University of Cambridge CITIID Cambridge Biomedical Campus Cambridge CB2 0AW (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Emil-Erlenmeyer-Forum 5, D-85354, Freising, Germany Bavarian Center for Biomolecular Mass Spectrometry, Technical University of Munich, Gregor-Mendel-Strasse 4, D-85354, Freising, Germany (1)
Department of Human Genetics (1)
Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 3BX, United Kingdom (1)
1 Department of Immunology, Interfaculty Institute for Cell Biology, Tübingen, Germany 2 German Cancer Consortium (DKTK), DKFZ Partner Site Tübingen, Tübingen, Germany (1)
Leibniz – Institut für Analytische Wissenschaften - ISAS - e.V., Otto-Hahn-Str.6b 44227 Dortmund, Germany phone: +49 231 1392-4143 fax: +49 231 1392-4850 http://www.isas.de (1)
Cancer Research Institute, Xiangya Basic Medical College, Central South University, No. 110 Xiangya Road, Kaifu District, Changsha City, Hunan Province (1)
Department of Microbiology and Molecular Genetics University of Pittsburgh (1)
Institute for Research in Biomedicine, Università della Svizzera italiana, Bellinzona, Switzerland. (1)
School of Life Sciences University of Sussex Brighton BN1 9QG UK (1)
Pediatric Infectious Diseases Molecular Genetics and Microbiology Stony Brook University Life Sciences Building, Rm. 158 Stony Brook, NY 11794-5222 U.S.A. (1)
Head Proteomics Group , Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (1)
UMS3444, Protein Science Facility, FRANCE (1)
University of Tübingen Interfaculty Institute for Cell Biology Department of Immunology Auf der Morgenstelle 15 72076 Tuebingen Germany (1)
Department of Human Genetics University of Chicago (1)
Dept. of Immunology, Oslo University Hospital, UiO (1)
Research Assistant Professor Center for Global Infectious Disease Research Seattle Children’s Research Institute Seattle, Washington, USA (1)
University of British Columbia - Center for blood research (1)

Location

United States (2)
Australia (1)
United Kingdom (1)
Canada (1)
Austria (1)
Spain (1)
Italy (1)
France (1)
Belgium (1)

Keyword

Epstein-Barr Virus (EBV) (2)
Allogeneic, Off-The-Shelf T-cell Immunotherapy (2)
Brentuximab Vedotin (1)
Solid Organ Transplant (HCT) (1)
Hematopoietic Cell Transplant (SOT) (1)
Primary Immunodeficiency (PID) (1)
Acquired Immunodeficiency (AID) (1)
Epstein-Barr Virus-associated Lymphoma (1)
HIV/AIDS Lymphoma (1)
Rheumatoid Arthritis and Lymphoma (1)
Tumor Necrosis Factor (TNF)-alpha Inhibitors and Lymphoma (1)
Inflammatory Bowel Disease and Lymphoma (1)
Epstein-Barr Virus-specific Cytotoxic T lymphocyte (EBV-CTL) (1)
Epstein-Barr Virus+ associated Nasopharyngeal Carcinoma (EBV+ NPC) (1)
Epstein-Barr Virus+ associated Leiomyosarcoma (EBV+ LMS) (1)
Immunoconjugates (1)
Rituximab (1)
Epstein-Barr Virus (EBV)-associated Lymphoproliferative Disease (LPD) (1)
Cytotoxic T lymphocyte (CTL) (1)
Cancer After Transplant (1)
Kidney transplant (1)
Renal transplant (1)
Liver transplant (1)
Heart transplant (1)
Lung transplant (1)
Intestinal transplant (1)
Pancreas transplant (1)
Post-transplant Lymphoma (1)
Solid Organ Transplant (SOT) (1)
Bone Marrow Transplant Complications (1)

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A metabolic dependency of EBV can be targeted to hinder B cell transformation

Following infection of B cells, Epstein Barr virus (EBV) engages host pathways that mediate cell proliferation and transformation, contributing to the propensity of the virus to drive immune dysregulation and lymphomagenesis. We found that the EBV protein EBNA2 initiates NAD de novo bios...

2024-04-29 | MTBLS2243 | MetaboLights

Proteomics of EBV-infected lytic and refractory cells

Most humans are infected with Epstein-Barr virus (EBV), a cancer-causing virus. While EBV generally persists silently in B lymphocytes, periodic lytic (re-)activation of latent virus is central to its life cycle and to most EBV-related diseases. However, a substantial fraction of EBV-infected B cell...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2016-07-22 | MSV000079993 | MassIVE

Insights into the Impact of Age and EBV Infection on Protein Expression and Molecular Characteristics

We aim to investigate the molecular heterogeneity of Burkitt lymphoma (BL) by analyzing the impact of age and Epstein-Barr virus (EBV) infection on protein expression in tumor tissues. Using liquid chromatography-mass spectrometry (LC-MS), we performed proteomic analysis on 10 formalin-fixed paraffi...

ORGANISM(S): Homo sapiens (Human)

2025-12-01 | PXD068020 | Pride

OLFM4 is a direct target of the cGAS-STING pathway and acts as an extracellular inhibitor for the Hippo signaling in EBV-associated cancer

To investigate protein components of MVs in EBVaGC, we collected clinical tissue samples of 3 EBV+ and 3 EBV- gastric cancer patients, and isolated MVs from these samples. Then performed 4D-label free quantitative proteomics analysis for each isolated MVs. Raw files of 6 samples are included in subp...

ORGANISM(S): Homo Sapiens

2024-11-18 | PXD057977 |

Gene expression profiling of age-related EBV-positive B-cell lymphoproliferative disorders uncovers alterations in characteristic oncogenetic pathways: possible implications for pathogenesis

Comprehensive gene expression profiles of Epstein-Barr virus (EBV)-associated B cell neoplasm (clinical samples + cell lines)

ORGANISM(S): Homo sapiens

2014-04-11 | E-MTAB-973 | biostudies-arrayexpress

Expression profiling of host genes modulated by Epstein-Barr virus (EBV) Rta in HEK293 cells

EBV Rta is a transcriptional activator that functions to disrupt EBV latency in cells of epithelial origin. This series of experiment is to identify host genes that are moduated by the expression of doxycycline-inducible EBV Rta in HEK293 cells. Designations for the pooled EBV Rta inducible cell lin...

ORGANISM(S): Homo sapiens

2011-05-22 | E-GEOD-24585 | biostudies-arrayexpress

Epstein–Barr virus (EBV) Rta-mediated cell cycle arrest enables permissive replication of EBV and Kaposi’s sarcoma-associated herpesvirus in 293 cells

Epstein-Barr virus (EBV) Rta is a latent-lytic molecular switch evolutionarily conserved in all gamma-herpesviruses. In previous studies, doxycycline-inducible Rta was shown to potently produce an irreversible G1 arrest followed by cellular senescence in 293 cells. Here, we demonstrate that in this ...

ORGANISM(S): Homo sapiens

2011-03-31 | E-GEOD-24587 | biostudies-arrayexpress

Identification of HLA-A*11:01 and A*02:01-restricted EBV Pep-tides using HLA Peptidomics

ORGANISM(S): Homo sapiens (Human)

2024-06-14 | PXD051538 | Pride

Immunopeptidome

single-cell RNA sequencing of effector memory CD8+ T cells of nasal-associated lymphoid tissue (NALT), spleen, submandibular & cervical lymph nodes and blood of Epstein Barr Virus (EBV)-infected NSG mice engrafted with a human immune system (HIS mice)

To identify the difference in transcriptome of effector memory CD8+ T cells in different tissues of EBV-infected HIS mice, we sorted CD8+ CD62L- CD45RA- cells from NALT, spleen, lymph node and blood via flow cytometry-assisted sorting. We pooled the cells of three individual mice together in equal c...

ORGANISM(S): Homo sapiens

2024-08-31 | E-MTAB-13853 | biostudies-arrayexpress

Human miRNA expression in EBV+ and EBV- PTLD tumor tissue sections

Expression of human miRNAs was analyzed in 150 ng of total RNA from nine post-transplant lymphoproliferative disorder (PTLD) patient samples, categorized as Epstein-Barr virus-positive (EBV+ , n = 4) or EBV- (n = 5) PTLD by hybridization on Affymetrix’s GeneChip miR Array 4.0 (Stanford Functional Ge...

ORGANISM(S): Homo sapiens

2022-10-31 | E-MTAB-12201 | biostudies-arrayexpress

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