Sort   by:  
 Page size 
ProteomicsMucin drives human gut microbial ecological interactions in an in vitro synthetic community
In this study, we created a synthetic mucin-degrading microbial community to specifically study mucin-driven ecological interactions in vitro. The synthetic community consisted of primary mucin degraders and cross-feeders. We tracked community composition and dynamics and the mucin-degrading enzymes...
ORGANISM(S): Desulfovibrio piger ATCC 29098 Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) Anaerostipes caccae DSM 14662 Faecalibacterium prausnitzii A2-165 Roseburia intestinalis L1-82 Methanobrevibacter smithii DSM 11975 Phocaeicola vulgatus ATCC 8482 Ruminococcus gnavus ATCC 29149 Anaerobutyricum hallii DSM 3353 Blautia hydrogenotrophica DSM 10507 Akkermansia muciniphila ATCC BAA-835 Bacteroides caccae ATCC 43185 Agathobacter rectalis ATCC 33656 Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) [Ruminococcus] torques ATCC 27756 
2025-03-12 | PXD051481 | Pride
Gut microbiota Mucin Ecological interactions Cross-feeding Synthetic community 
ProteomicsAddressing the Protease Bias in Quantitative Proteomics
Protein quantification strategies using multiple proteases have been shown to deliver poor inter-protease accuracy in label-free mass spectrometry experiments. By utilizing six different proteases with different cleavage sites, this study explores the protease bias and its effect on accuracy and pre...
ORGANISM(S): Homo Sapiens 
2022-09-02 | PXD033574 | panorama
TranscriptomicsEcological Adaptability and Response Mechanism to Salt Stress of Wild Apocynum venetum
We selected wild A. venetum of four distributed regions (jinta county, minqin county, hangjinqi and baicheng) as the test materials in the study. Based on the study of community composition, population genetic diversity and soil environmental properties of wild A. venetum, physiological characterist...
ORGANISM(S): Apocynum venetum 
2024-04-09 | GSE229255 | GEO
ProteomicsVenoms for all occasions: the functional toxin profiles of different anatomical regions in sea anemones are related to their ecological function
Phylum Cnidaria is the oldest extant venomous group and is defined by the presence of nematocysts, specialised organelles responsible for venom production and delivery. While nematocysts and toxin peptides are distributed across the entire animal, nematocyst and venom profiles have been shown to dif...
ORGANISM(S): Telmatactis 
2022-05-30 | PXD029717 | Pride
Actiniaria  venom  toxins  transcriptomics  proteomics  spatiotemporal expression 
UnknownProteomics and Metaproteomics Add Functional, Taxonomic and Biomass Dimensions to Modeling the Ecosystem at the Mucosal-luminal Interface.
Not available
S-EPMC8143649 | biostudies-literature
MetabolomicsHost Tree and Geography Induce Metabolic Shifts in the Epiphytic Liverwort Radula complanata
Bryophytes are prolific producers of unique, specialized metabolites that are not found in other plants. As many of these unique natural products are potentially interesting, for example, pharmacological use, variations in the production regarding ecological or environmental conditions have not ofte...
2026-01-29 | MTBLS6740 | MetaboLights
ProteomicsAssessment of sample preparation bias in mass spectrometry-based proteomics
For mass spectrometry-based proteomics, the selected sample preparation strategy is a key determinant for information that will be obtained. However, the corresponding selection is often not based on a fit-for-purpose evaluation. Here we report a comparison of in-gel (IGD), in-solution (ISD), on-fil...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-03-13 | MSV000083561 | MassIVE
UnknownDivergent venom effectors correlate with ecological niche in neuropteran predators.
Not available
S-EPMC11319779 | biostudies-literature
UnknownComparative proteomics of stenotopic caddisfly Crunoecia irrorata identifies acclimation strategies to warming.
Not available
S-EPMC6856850 | biostudies-literature
ProteomicsDivergent venom effectors correlate with ecological niche in neuropteran predators
Neuropteran larvae are fierce predators that use venom to feed on arthropods, but their venom system is poorly understood. The iconic antlions (Myrmeleontidae) are adapted to dry, sandy habitats, where they use pitfall traps and venom to catch and subdue large arthropod prey. The aphid lions, larvae...
ORGANISM(S): Euroleon nostras Chrysoperla carnea 
2024-08-13 | PXD047026 | Pride
Antlions Venom Aphid lions Euroleon nostras Comparative venomics Chrysoperla carnea 
Sort   by:  
 Page size