Engineer R R - OmicsDI

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Unknown (1135)
Proteomics (52)
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Genomics (13)
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Models (4)
Other (1)

Organisms

Homo sapiens (27)
Mus musculus (20)
Streptomyces coelicolor (5)
Burkholderia cenocepacia K56-2Valvano (5)
Arabidopsis thaliana (4)
Escherichia coli (4)
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Xenopus laevis (2)
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Glycine max (1)
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soil metagenome (1)
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Bacillus subtilis subsp. subtilis (1)
Phaeodactylum tricornutum CCAP 1055/1 (1)
Rickettsia conorii str. Malish 7 (1)
Rickettsia massiliae MTU5 (1)
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Synechocystis sp. PCC 6803 substr. Kazusa (1)

Organisms

Rhodotorula toruloides (2)
Homo sapiens (2)
Mus musculus (2)
Rhodococcus jostii (1)
unidentified (1)
synthetic construct (1)
Plasmodium falciparum (1)

Repository

pride (42)
biostudies-arrayexpress (30)
ENA (13)
geo (7)
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Tissue

Cell culture (6)
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Disease

Breast cancer (1)
Cardiovascular system disease (1)
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Cholangiocarcinoma (1)
Disease free (1)
Genetic disease (1)
Multiple myeloma (1)

Technology Type

Mass Spectrometry (42)
Shotgun proteomics (22)
Bottom-up proteomics (8)
Data-dependent acquisition (4)
Mass spectrometry (3)
Affinity purification coupled with mass spectrometry proteomics (3)
Data-independent acquisition (3)
Mass spectrometry assay (2)
HDMSE (2)
SWATH MS (2)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Top-down proteomics (1)

Instrument Platform

NextSeq 500 (3)
Illumina NovaSeq 6000 (2)
Orbitrap Exploris 480 (2)
Q Exactive Plus (2)
Liquid Chromatography MS - positive - hilic (2)
Linux computer (1)
Linux Beowulf cluster; AMD Opteron Linux Beowulf cluster; AMD Opteron 6168 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
Agilent 6530 QTOF (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
5975C Series GC/MSD (Agilent) (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)

Publication Date

2026 (15)
2023 (11)
2024 (9)
2025 (9)
2020 (8)
2021 (6)
2015 (5)
2011 (5)
2010 (5)
2018 (5)
2014 (4)
2013 (4)
2017 (3)
2022 (3)
2016 (2)
2019 (2)

UNIPROT ID/AC

P38889 (1)
Q9C5U0 (1)

CHEBI ID

CHEBI:18012 (3)
CHEBI:30769 (3)
CHEBI:15741 (2)
CHEBI:15756 (2)
CHEBI:16000 (2)
CHEBI:16010 (2)
CHEBI:16084 (2)
CHEBI:16634 (2)
CHEBI:16958 (2)
CHEBI:17234 (2)
CHEBI:17268 (2)
CHEBI:17505 (2)
CHEBI:17754 (2)
CHEBI:17822 (2)
CHEBI:17992 (2)
CHEBI:18237 (2)
CHEBI:22653 (2)
CHEBI:22660 (2)
CHEBI:26078 (2)
CHEBI:27266 (2)
CHEBI:27897 (2)
CHEBI:28044 (2)
CHEBI:28300 (2)
CHEBI:28757 (2)
CHEBI:28842 (2)
CHEBI:30887 (2)
CHEBI:30915 (2)
CHEBI:30997 (2)
CHEBI:23530 (1)
CHEBI:60283 (1)

Metabolite Name

Adenine (2)
Citrate (2)
Fructose (2)
Fumarate (2)
Guanidine (2)
Histidine (2)
Isocitrate (2)
Lysine (2)
Maltose (2)
Myo-inositol (2)
Phosphoenolpyruvate (2)
Putrescine (2)
Pyruvate (2)
Succinate (2)
Sucrose (2)
Trehalose (2)
Uracil (2)
Urea (2)
(1R,6S)-6-amino-5-oxocyclohexyl-2-ene-1-carboxylic-acid-ester (1)
(2-Hydroxyethyl)phosphonic acid (1)
(2E,4E)-6-(2-aminophenyl)-2-hydroxy-6-oxohexa-2,4-dienoic acid (1)
(2S,3S)-butane-2,3-diol (1)
(2s)-2-Amino-4-sulfinobutanoic acid (1)
(3-Methoxy-4-hydroxyphenyl)ethylene glycol sulfate (1)
(4Z,7Z,10Z,13Z,16Z,19Z)-Eicosahexaenoate (1)
(E)-Guggulsterone (1)
(R)-(-)-1-Amino-2-propanol (1)
(R)-(-)-2-Phenylpropionic Acid (1)
(R)-(-)-2-phenylglycine (1)
(R)-(-)-Mandelic acid (1)

First Public Date

2020 (4)
2026 (2)
2024 (2)
2025 (1)
2023 (1)
2022 (1)
2017 (1)
2016 (1)

Modelling Approach

Constraint-based model (1)
Logical model (1)
Ordinary differential equation model (1)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne, Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia (5)
Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology (NTNU), PO Box 8905, N-7491, Trondheim, Norway Phone: +47 72573075, Fax: +47 72576400 (2)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse (2)
Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes (URMITE) UMR 6236, Faculté de médecine 27 Bd Jean Moulin 13385 MARSEILLE Cedex 05 FRANCE (2)
Associate professor II Department of Biology Faculty of Natural Sciences marianne.nymark@ntnu.no +4741528304 Realfagbygget, DU1-119, Gløshaugen, Høgskoleringen 5 Trondheim 7030 Norway (1)
Center for Network Systems Biology, Boston University, USA (1)
Daglig leder, PROMEC Institutt for klinisk og molekylær medisin lars.hagen@ntnu.no 73598508 72573342 Laboratoriesenteret, 231.04.008, Øya, Erling Skjalgssons gate 1 PROMEC, Norway (1)
Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK; Department of Pharmacology, University of Cambridge, Tennis Court Road, Cambridge, CB2 1PD, UK. (1)
Department of Cancer Research and Molecular Medicine Faculty of Medicine Laboratory Centre, 5th floor. Erling Skjalgssons gt. 1 Norwegian University of Science and Technology NTNU 7006 Trondheim, Norway Tel: +47 72573076; Fax: +47 72576400 Cell. phone: +47 91825455 (1)
Department of Laboratory Medicine, Wiita Lab, University of California, San Francisco, USA (1)
Department of Microbial Proteomics, University of Greifswald, 17489 Greifswald, Germany (1)
Department of Plant Physiology, University of Rostock, Einsteinstr. 3, D-18059 Rostock, Germany (1)
Dipartimento di medicina Traslazionale, Università del Piemonte Orientale. (1)
EDyP (1)
General Manager of PROMEC, NTNU, Norway (1)
Georgia State University (1)
Group Leader, Department of Microbiology, Oslo University Hospital. Norway, Tel: +47 230 13906 (1)
Hubrecht Institute, KNAW (Royal Netherlands Academy of Arts and Sciences), Utrecht, The Netherlands (1)
Institutt for BIoingeniørfag (IBF), and CEMIR NTNU, Kunnskapssenteret, Øya, 7030, Norway (1)
Interfaculty Institute of Genetics and Functional Genomics, Department of Functional Genomics, University Medicine Greifswald, Greifswald, Germany (1)
MD, MSc, PhD Department of Clinical and Molecular Medicine asmund.flobak@ntnu.no +47 72573717 Gastrosenteret, Øya, Olav Kyrres gate 13 (1)
MRC Protein Phosphorylation and Ubiquitylation Unit, Faculty of Life Sciences, University of Dundee, UK (1)
Professor Department of Clinical and Molecular Medicine Laboratoriesenteret, 231.05.036, Øya, Erling Skjalgssons g 1 Trondheim 7030 Norway (1)
Professor in molecular biology and scientific leader of PROMEC Department of Clinical and Molecular Medicine Faculty of Medicine and Health Sciences +4773598608 +4791825455 +4772573076 Laboratoriesenteret, 231.05.034, Øya, Erling Skjalgssons g 1 Trondheim 7030, Norway (1)
Professor in molecular biology and scientific leader of PROMEC https://www.ntnu.edu/mh/promec Address Laboratoriesenteret, 231.05.034, Øya, Erling Skjalgssons g 1 Trondheim 7030 Norway (1)
Professor, Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology (NTNU), PO Box 8905, N-7491, Trondheim, Norway Phone: +47 72573075, Fax: +47 72576400 (1)
Professor, Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology, Trondheim 7030, Norway (1)
Proteomics and Modomics Experimental Core Facility (PROMEC) Department of Clinical and Molecular Medicine Medisinsk teknisk forskningssenter Olav Kyrres gt. 9 N-7489 Trondheim Norway (1)
Proteomics and Modomics Experimental Core Facility (PROMEC) Laboratory Centre, 4th floor East Wing, Room 231.04.008 Erling Skjalgssons gate 1, Trondheim, Norway (1)
School of Medicine, University of Dundee (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (2)

Classification

protozoa (1)

Study type

Transcription profiling by array (18)
RNA-seq of coding RNA (9)
RNA-seq of coding RNA from single cells (2)
ATAC-seq (1)

Release Date

2025 (176)
2023 (140)
2024 (117)
2022 (113)
2021 (112)
2020 (93)
2019 (68)
2018 (57)
2017 (52)
2016 (45)
2015 (37)
2014 (34)
2026 (30)
2011 (19)
2012 (19)
2013 (18)
2010 (12)
2008 (6)
2009 (5)
2007 (4)
2006 (2)
2004 (2)
2005 (1)
2002 (1)
2001 (1)
1998 (1)

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Production of (R)-3-hydroxybutyric acid by Arxula adeninivorans.

Not available

S-EPMC5209319 | biostudies-literature

Engineering Cupriavidus necator H16 for the autotrophic production of (R)-1,3-butanediol.

Not available

S-EPMC8449065 | biostudies-literature

Directed Evolution to Engineer Monobody for FRET Biosensor Assembly and Imaging at Live-Cell Surface.

Not available

S-EPMC5910193 | biostudies-literature

Anti-PD-1 re-navigates concealed IL-15 to rejuvenate tumor-specific PD-1+CD8+T cells inside the tumor microenvironment

The authors engineer an anti-PD-1-concealed sIL-15 fusion protein (αPD-1-IL-15-R), eliciting extraordinary antitumor immunity with negligible toxicity. αPD-1-IL-15-R largely expands tumor-specific CD8+T for effective tumor rejection through cis-delivery and further controls metastasis.

ORGANISM(S): Mus musculus

2022-09-21 | GSE212545 | GEO

Engineering high-potency R-spondin adult stem cell growth factors.

Not available

S-EPMC4352588 | biostudies-literature

R-2-hydroxyglutarate attenuates aerobic glycolysis in leukemia by targeting the FTO/m⁶A/PFKP/LDHB axis.

Not available

S-EPMC7935770 | biostudies-literature

Targeting GSK3β's S/T-P Kinase Activity with an Interface-Specific Nanobody Reduces Ischemic Stroke Injury via Ferritin Nanoparticle Delivery

Proline-directed (S/T-P) phosphorylation constitutes a fundamental yet incompletely understood neural signaling mechanism implicated in cerebral pathophysiology, including ischemic stroke. Building on our prior identification of a regulatory domain controlling the proline-directed kinase activity of...

ORGANISM(S): Mus musculus (Mouse)

2026-09-07 | PXD067942 | Pride

In Situ Preconcentration and Quantification of Cu²⁺ via Chelating Polymer-Wrapped Multiwalled Carbon Nanotubes.

Not available

S-EPMC7931178 | biostudies-literature

A TRIM21-based bioPROTAC highlights the therapeutic benefit of HuR degradation.

Not available

S-EPMC10625600 | biostudies-literature

Repurposing chloramphenicol acetyltransferase for a robust and efficient designer ester biosynthesis platform

ORGANISM(S): Clostridium Thermocellum Dsm 1313 (ncbitaxon:637887) Hungateiclostridium Thermocellum (ncbitaxon:1515)

MSV000086201 | MassIVE

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1246 Results

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