Env - OmicsDI

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Unknown (3290)
Genomics (242)
Transcriptomics (225)
Proteomics (62)
Other (11)
Metabolomics (10)
Models (1)
Clinical (1)

Organisms

Homo sapiens (116)
Mus musculus (46)
Macaca mulatta (30)
Ferroglobus placidus DSM 10642 (8)
Rattus norvegicus (4)
Ferroglobus placidus (3)
Caenorhabditis elegans (3)
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Neisseria meningitidis (1)
Zea mays (1)
Schizosaccharomyces pombe (1)
Trypanosoma brucei (1)

Organisms

Homo sapiens (38)
Macaca mulatta (29)
Human immunodeficiency virus 1 (12)
Mus musculus (7)
Human immunodeficiency virus (3)
Feline leukemia virus (2)
Geothrix fuzhouensis (1)
Geothrix campi (1)
Mycobacterium avium subsp. avium Env 77 (1)
Mycobacterium avium subsp. paratuberculosis Env 210 (1)
Trichoderma atroviride IMI 206040 (1)
Escherichia coli W (1)
Apopellia endiviifolia (species B) (1)
Pseudomonas tussilaginis (1)
Simian immunodeficiency virus (1)
Pseudomonas sp. Env-94 (1)
Pseudomonas sp. Env-82 (1)
Pseudomonas sp. Env-73 (1)
Pseudomonas sp. Env-66 (1)
Pseudomonas sp. Env-60 (1)
Pseudomonas sp. Env-44 (1)
Pseudomonas sp. Env-37 (1)
Pseudomonas sp. Env-33 (1)
Pseudomonas sp. Env-32 (1)
Pseudomonas sp. Env-17 (1)
Pseudomonas sp. Env-10 (1)
Pseudomonas sp. Env-2 (1)
Clupea harengus (1)
Myxococcus xanthus (1)
Trichoderma reesei (1)

Repository

ENA (230)
biostudies-arrayexpress (172)
geo (69)
MassIVE (24)
pride (23)
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GPMDB (1)

Tissue

Cell culture (6)
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Disease

Human immunodeficiency virus infectious disease (6)
Exposed_Seronegative (1)
Normal (1)
Neoplasms (1)
Not Available (1)
Acute T cell leukemia (1)
Drug dependence (1)
Leukemia (1)

Technology Type

Mass Spectrometry (23)
Shotgun proteomics (14)
Mass spectrometry (7)
Affinity purification coupled with mass spectrometry proteomics (4)
Bottom-up proteomics (4)
Gel-based experiment (3)
Data-independent acquisition (2)
NMR spectroscopy (1)
All-ion fragmentation (1)
DiaPASEF (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (30)
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Q Exactive (3)
NextSeq 2000 (2)
Illumina HiSeq 2500 (2)
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BD Rhapsody Express Instrument (1)
Bio-Rad Mini-PROTEAN electrophoresis system and wet transfer cassettes, (1)
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PC (1)
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418 [Affymetrix] (1)
ScanArray Express HT (1)
Affymetrix Fluidics Station 400 (1)
NextSeq 1000 (1)
Illumina MiSeq (1)
NextSeq 550 (1)
Illumina HiSeq 3000 (1)
Instrument (1)

Publication Date

2025 (33)
2021 (24)
2022 (22)
2011 (20)
2024 (18)
2014 (18)
2012 (18)
2020 (17)
2019 (17)
2010 (17)
2008 (15)
2023 (14)
2015 (14)
2026 (13)
2018 (12)
2016 (11)
2013 (11)
2007 (8)
2005 (3)
2017 (3)
2009 (3)

CHEBI ID

CHEBI:16027 (4)
CHEBI:17754 (4)
CHEBI:15422 (3)
CHEBI:16761 (3)
CHEBI:16908 (3)
CHEBI:15846 (3)
CHEBI:15901 (3)
CHEBI:17268 (3)
CHEBI:6650 (3)
CHEBI:1879 (3)
CHEBI:4167 (1)
CHEBI:16551 (1)
CHEBI:28087 (1)
CHEBI:15978 (1)
CHEBI:16084 (1)
CHEBI:29052 (1)
CHEBI:28013 (1)
CHEBI:18367 (1)
CHEBI:28602 (1)
CHEBI:30031 (1)
CHEBI:16236 (1)
CHEBI:15343 (1)
CHEBI:15361 (1)
CHEBI:17835 (1)
CHEBI:17794 (1)
CHEBI:16001 (1)
CHEBI:17665 (1)
CHEBI:16526 (1)
CHEBI:16108 (1)
CHEBI:18021 (1)

Metabolite Name

2-piperidinone (2)
Formic acid (2)
Acetic acid (2)
Uridine (2)
Taurine (2)
Phosphocholine (2)
NAD+ (2)
Inosine (2)
IMP (2)
FAD (2)
ATP (2)
AMP (2)
Choline (2)
Creatine (2)
Adenosine (2)
Glycine (2)
Glycerol (2)
Beta-alanine (2)
Myo-inositol (2)
ADP (2)
NADH (2)
S-Adenosyl-cysteine (1)
Hercynylcysteine sulfoxide (1)
Dimethyl-histidine (1)
Deferrichrome (1)
N-nicotinoylglycine (1)
Phosphatidylserine (36:3) (1)
Phosphatidylserine (36:2) (1)
Phosphatidylserine (36:1) (1)
Phosphatidylserine (34:2) (1)

First Public Date

2025 (35)
2024 (28)
2026 (23)
2020 (23)
2019 (23)
2022 (18)
2021 (17)
2017 (14)
2023 (12)
2014 (12)
2018 (9)
2016 (7)
2015 (6)
2013 (2)
2012 (1)

Modelling Approach

Ordinary differential equation model (1)

Study status

Recruiting (1)

Lab affiliation

1Department of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, Los Angeles, CA, USA 2Institute for Quantitative and Computational Biosciences, University of California, Los Angeles, Los Angeles, CA, USA 3Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA, USA (1)
Analytical Biochemistry and Proteomics Unit, Institut Pasteur de Montevideo, IIBCE (1)
Analytical Biochemistry and Prtoeomics Unit IIBCE& Institut Pasteur de Montevideo (1)
Assistant Professor, Department of Biochemistry, University of Washington, Seattle, Washington 98195, USA (1)
Cambridge Institute for Medical Research, University of Cambridge, Cambridge, CB2 0XY, UK. (1)
Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute, Woolloongabba, QLD, Australia (1)
Department of Biochemistry, University of Washington, Seattle, Washington 98195, USA (1)
Department of Chemistry and Biochemistry University of Bern Freiestrasse 3 3012 Bern Switzerland (1)
Department of Microbiology; Icahn School of Medicine at Mount Sinai; New York, NY, 10029; USA (1)
Department of Molecular Medicine, The Scripps Research Institute, La Jolla, California 92037 United States (1)
Dept. of Molecular Biology, Princeton, NJ USA 08544 (1)
Deputy Head (Research), Department of Biochemistry and Molecular Biology Head Immunoproteomics Laboratory Monash University, Clayton Campus Clayton 3800 Victoria Australia (1)
Division of Infection and Immunity University College London London United Kingdom (1)
Institut Pasteur (1)
Institute for Quantitative and Computational Biosciences (QCBio), University of California, Los Angeles, USA Department of Microbiology, Immunology, and Molecular Genetics (MIMG), University of California, Los Angeles, LA, USA Molecular Biology Institute, University of California, Los Angeles, USA (1)
Instituto de Biología Molecular y Celular de Rosario-CONICET. Argentina. (1)
Laboratoire de biologie et modélisation de la cellule Ecole Normale Supérieure - Lyon, Université Claude Bernard Lyon 1, U1293, UMR5239, France (1)
NINDS Clinical Proteomics Unit National Institutes of Health (1)
School of Biological Sciences Victoria University of Wellington (1)
Sichuan University, West China Hospital (1)
Texas Tech University (1)
UNC HIV Cure Center & Department of Biochemistry and Biophysics University of North Carolina (1)
University of Alabama at Birmingham (1)

Keyword

Laryngeal (1)
Hypopharyngeal (1)
Nasal Cavity (1)
Nasopharyngeal (1)
Oral Cavity (1)
Oropharyngeal (1)
Throat (1)
Lung Carcinoid (1)
Skin (1)
Basal (1)
Squamous (1)
Merkel Cell (1)
Pancreatic Neuroendocrine Tumor (1)
Small Intestine (1)
Penile (1)
Vaginal (1)
Vulvar (1)
Bone (1)
Rhabdomyosarcoma (1)
Soft Tissue Sarcoma (1)
Eye (1)
Spinal Cord (1)
Adrenal (1)
Pituitary (1)
Medulloblastoma (1)
Wilms (1)
Precision Oncology (1)
Patched-1 (1)
PTCH1 (1)
Hedgehog inhibitor (1)

IsPrivate

False (1)

Classification

viruses (18)
bacteria (4)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (102)
RNA-seq of coding RNA (29)
RNA-seq of coding RNA from single cells (20)
Human - High-throughput sequencing (2)
RNAi profiling by array (2)
Comparative genomic hybridization by array (2)
ChIP-seq (2)
Unknown experiment type (1)
RNA-seq of non coding RNA from single cells (1)
Human - Single-cell sequencing (1)
Transcription profiling by tiling array (1)
Genotyping by array (1)
CLIP-seq (1)
ATAC-seq (1)
Other (1)
DNA-seq (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)
Genotyping by high throughput sequencing (1)
RNA-seq of total RNA (1)
Interventional (1)

Release Date

2021 (230)
2020 (230)
2019 (215)
2022 (206)
2015 (201)
2017 (197)
2025 (189)
2016 (184)
2018 (183)
2023 (172)
2014 (171)
2013 (153)
2011 (148)
2012 (141)
2024 (140)
2010 (98)
2009 (87)
2008 (73)
2007 (58)
2005 (58)
2006 (54)
2004 (46)
1998 (44)
2002 (33)
2000 (32)
1999 (32)
2003 (31)
2026 (26)
2001 (26)
1996 (1)

Location

United States (1)

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Characterization of Bovine Leukemia Virus Env protein soluble ectodomain expressed in Drosophila S2 cells

Shotgun analysis of recombinant bovine Leukemia Virus Env protein using Drosophila S2 cells as expression system

ORGANISM(S): Drosophila melanogaster (Fruit fly)

2024-06-23 | PXD049277 | Pride

Mycobacterium avium subsp. paratuberculosis Env 210

Mycobacterium avium subsp. paratuberculosis Env 210 Genome Sequencing

PRJNA72219 | ENA

Mycobacterium avium subsp. avium Env 77

Mycobacterium avium subsp. avium Env 77 Genome Sequencing

PRJNA72223 | ENA

Impact of glycan positioning on HIV-1 Env glycan shield density, function, and antibody recognition

N-glycans, which represent >50% mass of the HIV-1 envelope (Env) trimer, play important roles for virus-cell entry and immune evasion. How each glycan unit interacts to shape the Env protein-sugar complex and affects Env function is not well understood. Here, high-resolution glycomics analysis of ...

ORGANISM(S): HIV-1 M:G_PT919

2021-09-09 | PXD017941 | Pride

Glycosylation Env Hiv N262 Gp120

Transcription profiling by array of human CD4+ T-lymphocytes infected with VSVG-pseudotyped HIV-1 viruses lacking Env, Vpr, and Nef

The high mutation rate of HIV is linked to the generation of viruses expressing proteins with altered function whose impact on disease progression is unknown. We investigated the effects of HIV-1 viruses lacking Env, Vpr and Nef on CD4+ T cell gene expression using high-density DNA microarray analys...

ORGANISM(S): Homo sapiens

2008-10-26 | E-GEOD-12963 | biostudies-arrayexpress

Pseudomonas sp. Env-2

Pseudomonas Genome sequencing and assembly clone env-2

PRJNA1146060 | ENA

Pseudomonas sp. Env-17

Pseudomonas Genome sequencing and assembly clone env-17

PRJNA1146063 | ENA

Pseudomonas sp. Env-94

Pseudomonas Genome sequencing and assembly clone env-94

PRJNA1146912 | ENA

Pseudomonas sp. Env-32