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MetabolomicsMultiomics of synaptic junctions reveals altered lipid metabolism and signaling following environmental enrichment
Membrane lipids and their metabolism have key functions in neurotransmission. Here we provide a quantitative lipid inventory of mouse and rat synaptic junctions. To this end, we developed a multiomics extraction and analysis workflow to probe the interplay of proteins and lipids in synaptic signal t...
2021-09-27 | MTBLS1531 | MetaboLights
MetabolomicsThe metabolic response of marine copepods to environmental warming and ocean acidification in the absence of food
Marine copepods are central to the productivity and biogeochemistry of marine ecosystems. Nevertheless, the direct and indirect effects of climate change on their metabolic functioning remain poorly understood. Here, we use metabolomics, the unbiased study of multiple low molecular weight organic me...
2015-10-13 | MTBLS91 | MetaboLights
MetabolomicsMaize Recruits Beneficial Microorganisms via Rhizosphere Metabolites as Signals to Construct a Functional Network for Saline-Alkaline Stress Resistance

Carbonate-type saline-alkaline stress severely constrains maize production; however, the synergistic response mechanisms between rhizosphere microorganisms and metabolites remain unclear. This study focused on maize fields in the carbonate chernozem region of the Songnen Plain in Northeast China....

2026-06-08 | MTBLS13956 | MetaboLights
ProteomicsLeishmania donovani phosphoproteome during differentiation and as a response to environmental signals
Changes Leishmania donovani phosphoproteome during promastigote-to amastigote differentiation and as a response to environmental signals (pH and temperature) using TiO2 phosphopeptide enrichment and iTRAQ labeling. LC-MS/MS on QSTAR
ORGANISM(S): Leishmania donovani 
2014-04-24 | PXD000671 | Pride
Qstar Leishmania donovani Itraq 
TranscriptomicsInteraction between BZR1 and PIF4 integrates brassinosteroid and environmental responses [RNA-seq]
Plant growth is coordinately regulated by environmental and hormonal signals. Brassinosteroid (BR) plays essential roles in growth regulation by light and temperature, but the interactions between BR and these environmental signals remain poorly understood at the molecular level. Here, we show that ...
ORGANISM(S): Arabidopsis thaliana 
2012-07-07 | E-GEOD-37159 | biostudies-arrayexpress
ProteomicsEnvironmental signals act as a driving force for metabolic and defense responses in the Antarctic plant Colobanthus quitensis
Due to the progressive environmental change that the Antarctic Peninsula has undergone over time, a more comprehensive overview of the metabolic features of Colobanthus quitensis becomes particularly interesting to assess its ability to respond to environmental stresses. To this end, a differential ...
ORGANISM(S): Colobanthus quitensis 
2023-03-11 | PXD037324 | Pride
Response to stress Environmental signals Colobanthus quitensis Enzymatic activity Differential proteomic analysis Gene expression analysis Ms/ms analysis 
TranscriptomicsA New Class of Homoserine Lactone Quorum Sensing Signals
Quorum sensing is a term used to describe cell-to-cell communication that allows cell density-dependent gene expression. Many Gram-negative bacteria use acyl-homoserine lactone (acyl-HSL) synthases to generate fatty acyl-HSL quorum sensing signals, which function with signal receptors to control exp...
ORGANISM(S): Rhodopseudomonas palustris CGA009 
2010-05-25 | E-GEOD-10642 | biostudies-arrayexpress
TranscriptomicsHBI1 integrates hormonal and environmental signals to regulate the trade-off between growth and immunity (RNA-seq)
The trade-off between growth and immunity is crucial for survival in plants. An antagonistic interaction has been observed between the growth-promoting hormone brassinosteroid and pathogen associated molecular pattern (PAMP) signals, which induce immunity but inhibit growth, however the underlying m...
ORGANISM(S): Arabidopsis thaliana 
2014-05-30 | E-GEOD-53078 | biostudies-arrayexpress
GenomicsInteractions of ARF6 with PIF4, BZR1, and RGA integrate auxin signaling with environmental and other hormonal signals in Arabidopsis [ChIP-Seq]
Auxin is a major plant hormone for both development and environmental adaptation. Auxin responses are context dependent and highly modulated by light, temperature, the circadian clock, brassinosteroid, and gibberellin, but the underlying mechanisms remain unclear. Here, we show that auxin signaling ...
ORGANISM(S): Arabidopsis thaliana 
2014-06-03 | E-GEOD-51770 | biostudies-arrayexpress
TranscriptomicsInteractions of ARF6 with PIF4, BZR1, and RGA integrate auxin signaling with environmental and other hormonal signals in Arabidopsis [RNA-Seq]
Auxin is a major plant hormone for both development and environmental adaptation. Auxin responses are context dependent and highly modulated by light, temperature, the circadian clock, brassinosteroid, and gibberellin, but the underlying mechanisms remain unclear. Here, we show that auxin signaling ...
ORGANISM(S): Arabidopsis thaliana 
2014-06-03 | E-GEOD-51772 | biostudies-arrayexpress
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