Epigenome - OmicsDI

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Genomics (5218)
Unknown (4447)
Transcriptomics (1481)
Methylation profiling (836)
Other (182)
Proteomics (75)
Metabolomics (12)
Genomic (10)
Clinical (1)

Organisms

Homo sapiens (2840)
Mus musculus (1021)
Arabidopsis thaliana (181)
Rattus norvegicus (66)
Drosophila melanogaster (33)
Danio rerio (28)
Saccharomyces cerevisiae (14)
Macaca mulatta (11)
Plasmodium falciparum (9)
Canis lupus familiaris (9)
Glycine max (8)
Brassica napus (8)
Plasmodium falciparum 3D7 (7)
Neurospora crassa (7)
Brassica rapa (6)
Pan troglodytes (4)
Taeniopygia guttata (3)
Sminthopsis crassicaudata (2)
Callithrix jacchus (2)
Heterocephalus glaber (2)
Sus scrofa (2)
Ricinus communis (2)
Sterkiella histriomuscorum (2)
Arachis duranensis (1)
Elaeis guineensis (1)
Geobacter metallireducens (1)
Pongo pygmaeus (1)
Arachis hypogaea (1)
Phaeodactylum tricornutum (1)
Zea mays (1)

Organisms

Homo sapiens (1564)
Mus musculus (860)
Arabidopsis thaliana (118)
Rattus norvegicus (49)
Drosophila melanogaster (22)
Danio rerio (20)
Gallus gallus (16)
Bos taurus (14)
Oryza sativa (12)
Saccharomyces cerevisiae (9)
Brassica napus (7)
Caenorhabditis elegans (7)
Triticum aestivum (6)
Macaca mulatta (6)
Neurospora crassa (5)
Nannochloropsis oceanica (5)
Schizosaccharomyces pombe (5)
Plasmodium falciparum 3D7 (4)
Ovis aries (4)
Glycine max (4)
Malus domestica (4)
Solanum lycopersicum (4)
Plasmodium falciparum (4)
unidentified (4)
Macaca fascicularis (3)
Mus musculus musculus (3)
Gasterosteus aculeatus (3)
Canis lupus familiaris (3)
Oryzias latipes (3)
Brassica rapa (3)

Repository

ENA (3390)
geo (2819)
EGA (808)
biostudies-arrayexpress (696)
pride (61)
dbGaP (10)
MetaboLights (10)
MassIVE (7)
iProX (5)
ExpressionAtlas (3)
GNPS (2)
EVA (1)
NODE (1)
PanoramaPublic (1)

Tissue

Cell culture (18)
Epithelial cell (8)
Embryonic stem cell (7)
Embryo (5)
Liver (3)
Brain (3)
Permanent cell line cell (3)
Blood (2)
Caput epididymis (2)
Early embryonic cell (2)
HeLa cell (2)
T cell (2)
Basal forebrain (1)
Cervix epithelium (1)
Colon (1)
Embryonic fibroblast (1)
Erythrocyte (1)
Gastrocnemius (1)
Heart (1)
Hepatocyte (1)
Leukocyte (1)
Lung (1)
Monocyte (1)
Neutrophil (1)
Pheochromocytoma cell (1)
Prostate cancer cell line (1)
Quadriceps (1)
Seedling (1)
Stem cell (1)
Trophoblast cell (1)

Disease

Breast cancer (3)
Glioblastoma multiforme (2)
Neuroblastoma (2)
Colon cancer (2)
Carcinoma (1)
Malignant neoplasm of colon (1)
Acute leukemia (1)
Cervix carcinoma (1)
Disease free (1)
Hepatocellular carcinoma (1)
Infertility (1)
Lung carcinoma (1)
Lymphoma (1)
Merkel cell carcinoma (1)
Paraganglioma (1)
Pheochromocytoma (1)
Tuberculosis (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass spectrometry (9)
Illumina HiSeq 2000 (8)
Illumina HiSeq 4000, ILLUMINA (2)
Illumina HiSeq 2500 (2)
Illumina HiSeq 3000, Illumina HiSeq 2000, Illumina HiSeq 4000, ILLUMINA (1)
Illumina CytoSNP, Illumina HumanOmni2.5, ILLUMINA, Illumina 450k, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina 450K, Bisulfite-Seq (1)
Illumina HumanMethylation 450K (1)
MeDIP-seq (1)
Illumina HiSeq 3000 (1)
Illumina ChIP-Sequencing, Illumina MBD-Sequencing, Illumina beadarray, Illumina HiSeq 2500, Illumina MiSeq, Illumina Bisulfite-Sequencing (1)
ILLUMINA, RNAseq, Illumina HiSeq 2000, Illumina Human Methylation 450k BeadChip (1)
Illumina HiSeq 2000, Infinium HumanMethylation450 BeadChip (1)
Illumina_450K (1)
Illumina450K (1)
Illumina HiSeq 2000, NextSeq 500, ILLUMINA (1)
Illumina HumanOmni1-Quad-Illumina GenomeStudio (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Affymetrix U219, Illumina HumanMethylation450, Illumina Genome Analyzer IIx (1)
Illumina Genome Analyzer IIx, HumanMethylation450k Bead Chip - Genome Studio, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, HumanMethylation450k Bead Chip - Genome Studio, Illumina Genome Analyzer IIx (1)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, Illumina Genome Analyzer II (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Unknown (1)
Illumina HiSeq 2000, ILLUMINA (1)
NMR spectroscopy (1)

Instrument Platform

Illumina NovaSeq 6000 (28)
Illumina HiSeq 2000 (19)
Illumina HiSeq 2500 (17)
Illumina HiSeq 1500 (8)
Illumina HiSeq 4000 (7)
NextSeq 500 (6)
Illumina Genome Analyzer IIx (3)
Illumina Genome Analyzer II (3)
Illumina NovaSeq X (3)
NextSeq 2000 (3)
NextSeq 550 (3)
Scanning of was performed on an Axon 4000B scanner (2)
IScan (2)
DNBSEQ-G400 (2)
Illumina MiSeq (2)
Maxwell® RSC 48 Instrument (Promega, AS8500) (1)
Transrectal ultrasound-guided systematic sampling of prostate tissue (TRUS biopsy) (1)
Bravo automated liquid handling robot station (Agilent) (1)
Dell precision T7500 (1)
Infinium MethylationEPIC v2.0 Kit (1)
Wizard Genomic DNA Purification Kit (1)
Lab Bench (1)
Covaris sonicator, PCR thermocycler, magnetic rack for SPRI bead clean-up (1)
Liquid-nitrogen mortar and pestle, benchtop microcentrifuge, vortex mixer (1)
Dissecting tools, liquid nitrogen, −80 °C freezer (1)
Controlled-environment growth chamber (short-day; 8 h light / 16 h dark) (1)
Illumina MethylationEPIC BeadChip platform (Illumina, San Diego, CA, USA) (1)
PromethION (1)
Mac (1)
Computer (1)

Publication Date

2025 (378)
2023 (344)
2024 (315)
2022 (279)
2021 (237)
2026 (210)
2020 (208)
2019 (206)
2014 (195)
2015 (180)
2018 (174)
2017 (167)
2011 (165)
2013 (158)
2016 (152)
2012 (132)
2010 (70)
2008 (16)
2009 (11)
2007 (5)

CHEBI ID

CHEBI:18186 (5)
CHEBI:16449 (5)
CHEBI:26271 (4)
CHEBI:25094 (4)
CHEBI:18237 (4)
CHEBI:22653 (4)
CHEBI:28300 (4)
CHEBI:15428 (4)
CHEBI:15741 (4)
CHEBI:6650 (4)
CHEBI:28044 (4)
CHEBI:27266 (4)
CHEBI:18012 (4)
CHEBI:78320 (4)
CHEBI:30915 (4)
CHEBI:16113 (3)
CHEBI:22211 (3)
CHEBI:17822 (3)
CHEBI:22660 (3)
CHEBI:27570 (3)
CHEBI:16811 (3)
CHEBI:24898 (3)
CHEBI:25017 (3)
CHEBI:17497 (3)
CHEBI:29016 (3)
CHEBI:15422 (3)
CHEBI:30769 (3)
CHEBI:28862 (2)
CHEBI:17992 (2)
CHEBI:88003 (2)

Metabolite Name

Adenosine triphosphate (ATP) (2)
Deoxyadenosine (2)
Lactic acid (2)
Alanine (2)
N6-methyl-2’-deoxyadenosine (1)
Plasmalogen PC(36:3) or PC(O-36:4) (1)
Plasmalogen PC(36:4) or PC(O-36:5) (1)
Plasmalogen PC(38:4) or PC(O-38:5) (1)
GLY (1)
ASP (1)
MET (1)
2-hydroxy-butyrate (1)
2-methyl-butyrate (1)
Fructose-1,6-Bisphosphate (1)
Sedoheptulose-7-Phosphate (1)
AlphaKetoglutarate (1)
Glucose-1-Phosphate (1)
M468.2T23.7 (1)
M686.4T23.6 (1)
M688.4T22.9 (1)
M702.4T22.6 (1)
M518.3T22.6 (1)
M1382.7T22.6 (1)
M697.4T22.6 (1)
M500.3T22.6 (1)
M454.3T22.6 (1)
M674.4T22.3 (1)
M608.2T22.1 (1)
M606.2T21.1 (1)
M678.3T21.1 (1)

First Public Date

2025 (414)
2023 (400)
2024 (381)
2022 (303)
2021 (262)
2019 (257)
2014 (256)
2020 (243)
2026 (231)
2017 (189)
2018 (171)
2015 (114)
2013 (90)
2016 (76)
2012 (3)

Classification

bacteria (9)
protozoa (8)
fungi (2)
helminths (1)
viruses (1)

Modification

N6 (4)
4x(15)N labeled L-arginine (1)

Study status

Recruiting (1)

Study type

Methylation profiling by array (186)
Transcription profiling by array (113)
ChIP-seq (90)
RNA-seq of coding RNA (81)
Methylation profiling by high throughput sequencing (77)
ChIP-chip by tiling array (41)
RNA-seq of non coding RNA (14)
Comparative genomic hybridization by array (13)
Other (13)
Cell line - High-throughput sequencing (9)
Bisulfite-seq (8)
RNA-seq of coding RNA from single cells (8)
ChIP-chip by array (6)
ATAC-seq (6)
Human - Methylation microarray (4)
Transcription profiling by tiling array (3)
Transcription profiling by RT-PCR (3)
DNA-seq (3)
RNA-seq of total RNA (3)
Genotyping by array (2)
ScATAC-seq (2)
Proteomic profiling by array (2)
Cell line - Methylation microarray (1)
Unknown experiment type (1)
MNase-seq (1)
RNA-seq of non coding RNA from single cells (1)
Human - Single-cell sequencing (1)
Capture-C (1)
MicroRNA profiling by high throughput sequencing (1)
RIP-seq (1)

Release Date

2022 (518)
2021 (494)
2023 (488)
2025 (419)
2020 (410)
2019 (388)
2024 (349)
2018 (315)
2016 (305)
2017 (273)
2015 (266)
2014 (227)
2013 (214)
2012 (148)
2011 (131)
2010 (83)
2026 (75)
2008 (16)
2009 (13)
2007 (6)
2005 (2)
2004 (2)
2006 (1)

Lab affiliation

Department of Genetic Medicine and Development, Faculty of Medicine, University of Geneva, Switzerland (2)
Hainan Normal University (2)
1 Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry,Germany. 2 NNF Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Denmark (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich Gregor-Mendel-Straße 4 85354 Freising (1)
Bavarian Center for Biomolecular Mass Spectrometry Technische Universität München Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Biological Mass Spectrometry Lab, Department of Translational Medicine (DiMeT), Center for Translational Research on Autoimmune & Allergic Diseases - CAAD, University of Piemonte Orientale, Novara, Italy (1)
Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt am Main, Germany (1)
Center for Molecular Medicine, University Medical Center Utrecht, 3584 Utrecht, the Netherlands. (1)
Centre for Genomics and Computational Biology, Barts Cancer Institute, Queen Mary University of London (1)
Department of Anatomy and Developmental Biology, Australian Regenerative Medicine Institute, Monash University, Australia (1)
Department of Chemistry and Biochemistry, University of California San Diego (1)
Department of Diabetes Complications and Metabolism, Beckman Research Institute, City of Hope, Duarte, CA 91010 (1)
Department of Genome Regulation, Max Planck Institute for Molecular Genetics; Berlin, Germany (1)
Department of Integrative and Structural Computational Biology, The Scripps Research Institute, La Jolla, CA (1)
Department of Medical Oncology and Department of Molecular Cancer Research, Cancer Genomics Netherlands, University Medical Center Utrecht, Utrecht, the Netherlands (1)
Department of Molecular Medicine, Medical School, University of Padua, Padua 35121, Italy (1)
Department of Proteomics and Signal Transduction Max Planck Institute of Biochemistry (1)
Department of precious medicine, University of Campania "L.Vanvitelli", vico L. de Crecchio 8, Naples, Italy (1)
Dept. of Microbiology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil. (1)
Division of Maternal Fetal Medicine Department of Obstetrics and Gynecology Oregon Health & Science University 3181 SW Sam Jackson Park Road, Mail Code L-458, Portland, OR, 97239, USA (1)
Division of Molecular Genetics, The Netherlands Cancer Institute, Plesmanlaan 121, 1066CX, Amsterdam, the Netherlands (1)
ETH Zurich Institute of Molecular Systems Biology Switzerland (1)
ETH Zürich, D-HEST (1)
Environmental Epigenetics Lab,Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology (1)
Epigenetics Institute, Dept. of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA (1)
European Institute of Oncology (1)
European Institute of Oncology, Milan, Italy (1)
Facility - Proteomics & Metabolomics (1)
Functional Proteomics, ICR (1)
German cancer research center, Proteomics of stem cells and cancer, B230 (1)

Location

Germany (1)

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Chem-CRISPR/dCas9FCPF - A platform for chemically induced epigenome editing

Epigenetic aberration is one of the major driving factors in human cancer, often leading to acquired resistance to chemotherapies. Various chemical epigenetic modulators have been reported. Nonetheless, outcomes from animal models and clinical trials have underscored the substantial setbacks attribu...

ORGANISM(S): Homo sapiens (Human)

2025-05-06 | PXD048673 | Pride

Histone modifications during acute S-phase defects

Long-term perturbation of de novo chromatin assembly during DNA replication has profound effects on epigenome maintenance and cell fate. The early mechanistic origin of these functional defects is unknown. Here, we combine acute degradation of Chromatin Assembly Factor 1 (CAF-1), a key player in de ...

ORGANISM(S): Homo sapiens (Human)

2024-11-14 | PXD050618 | Pride

Cell cycle Chromatin assembly Histone chaperones Epigenome stability Dna replication

Epigenome

2022-03-31 | OEX00016373 | NODE

Highly integrated epigenome maps in Arabidopsis - methylcytosine immunoprecipitation

Part of a set of highly integrated epigenome maps for Arabidopsis thaliana. Keywords: methylcytosine ChIP-chip on tiling array Identification of cytosine DNA methylation by methylcytosine immunoprecipitation and whole-genome oligonucleotide tiling microarrays for wildtype Columbia-0.