Ethics - OmicsDI

Show results for

Unknown (16218)
Transcriptomics (875)
Genomics (578)
Proteomics (304)
Metabolomics (234)
Clinical (21)
Genomic (13)
Other (2)
Methylation profiling (2)
Multiomics (1)

Organisms

Homo sapiens (653)
Mus musculus (195)
Rattus norvegicus (56)
Sus scrofa (11)
Drosophila melanogaster (9)
Danio rerio (9)
Bos taurus (8)
Canis lupus familiaris (8)
Gallus gallus (6)
Ovis aries (4)
Heterocephalus glaber (3)
Sminthopsis crassicaudata (2)
Bathyergus suillus (2)
Equus caballus (2)
mouse gut metagenome (2)
Vibrio cholerae (2)
Arabidopsis thaliana (2)
Macaca fascicularis (2)
Panthera tigris altaica (1)
Thermoplasma acidophilum DSM 1728 (1)
human gut metagenome (1)
Notophthalmus viridescens (1)
Rana temporaria (1)
Monodelphis domestica (1)
Coturnix japonica (1)
Entamoeba histolytica (1)
Streptococcus agalactiae (1)
Plasmodium falciparum 3D7 (1)
Helicobacter pylori (1)
Mesocricetus auratus (1)

Organisms

Homo sapiens (311)
Mus musculus (35)
Rattus norvegicus (14)
Ovis aries (4)
human gut metagenome (4)
uncultured human oral bacterium (3)
Oncorhynchus mykiss (3)
Bos taurus (2)
Plasmodium falciparum (1)
Serratia marcescens (1)
Escherichia coli (1)
Pristimantis bogotensis (1)
Methanobrevibacter smithii (1)
Homo (1)
Camelus dromedarius (1)
Solea senegalensis (1)
Catharanthus roseus (1)
Macaca fascicularis (1)
Alectoris rufa (1)
Oryctolagus cuniculus (1)
uncultured bacterium (1)
chicken gut metagenome (1)
human oral metagenome (1)
Sus scrofa (1)
mouse gut metagenome (1)
human metagenome (1)

Repository

biostudies-arrayexpress (880)
ENA (481)
pride (278)
MetaboLights (232)
geo (53)
EGA (51)
dbGaP (13)
iProX (8)
MassIVE (7)
GNPS (2)
NODE (2)
jPOST (1)

Tissue

Blood plasma (30)
Brain (29)
Blood serum (25)
Blood (22)
Cell culture (15)
Skin (11)
Peripheral blood mononuclear cell (10)
Epithelial cell (10)
Liver (9)
Saliva (8)
Blood cell (8)
Heart (7)
Urine (6)
Lung (6)
Skeletal muscle (5)
Bone marrow (5)
Colon (5)
Feces (4)
Sperm (4)
Blood platelet (3)
Monocyte (3)
Cerebrospinal fluid (3)
Fibroblast (3)
Cell suspension culture (3)
Kidney (3)
Whole body (3)
Soft tissue sarcoma cell (2)
Somatic cell (2)
Stool (1)
Prostate (1)

Disease

Normal (11)
Colorectal Neoplasms (7)
Obesity (3)
Prostate cancer (3)
Chronic myeloid leukemia (2)
Schizophrenia (2)
XCGD (1)
HPV positive (1)
Benign nevi (1)
Breast Carcinoma (1)
HIV and HCV coinfected (1)
Spindle cell tumor (1)
Sham infected (1)
HIV (1)
Immuno-osseus dysplasiaspondyloenchondrodysplasia (SPENCD) (1)
Benign meningioma (1)
Glioma (1)
Malignant fibrous histiocytoma (1)
Giant cell glioblastoma (1)
Osteosarcoma (1)
Cirrhosis (1)
Bordetella pertussis inoculated (1)
Limited scleroderma (1)
Partially decidualised (1)
Leiomyosarcoma (1)
Idiopathic dilated cardiomyopathy (1)
Healthy (1)
Control (1)
Lifestyle behaviours that influence risk of the five most common preventable cancers in the UK (lung (1)
Peritoneal Metastases (1)

Technology Type

Mass Spectrometry (278)
Mass spectrometry (188)
Shotgun proteomics (177)
Bottom-up proteomics (43)
Data-independent acquisition (25)
NMR spectroscopy (23)
Data-dependent acquisition (23)
Mass spectrometry assay (21)
SWATH MS (21)
Top-down proteomics (16)
Gel-based experiment (13)
Affinity purification coupled with mass spectrometry proteomics (8)
SRM/MRM (4)
Illumina HiSeq 2000 (3)
NMR spectroscopy assay (3)
DiaPASEF (3)
All-ion fragmentation (2)
Illumina HumanOmni2.5-8 (1)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 2500 (1)
Mass spectrometry imaging (1)
Immunopeptidomics (1)
HDMSE (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (100)
Illumina HiSeq 2500 (43)
Illumina HiSeq 4000 (42)
NextSeq 500 (35)
Illumina HiSeq 2000 (30)
Illumina NovaSeq X (9)
N/A (8)
NextSeq 2000 (7)
NextSeq 550 (6)
HiSeq X Ten (5)
Chromium Next GEM Single Cell Multiome ATAC + Gene Expression Reagent Bundle, (4)
10X Genomics reagent kit (4)
PromethION (4)
Illumina Genome Analyzer IIx (4)
10x Genomics Chromium Controller (4)
NA (3)
- (3)
BGISEQ-500 (3)
10X Chromium Nuclei Isolation Kit (2)
Tru-cut biopsy needle (Marquee®, 16 G × 10 cm) (2)
Single cells were captured using the 10x Genomics Chromium Controller. (2)
. (2)
None (2)
Agilent G2565BA (2)
GenePix 4000A [Axon Instruments] (2)
ScanArray Express HT [PerkinElmer] (2)
Illumina Genome Analyzer II (2)
Scanning hardware (2)
DNBSEQ-T7 (2)
Illumina HiSeq 2000 platform (1)

Publication Date

2025 (130)
2022 (121)
2024 (97)
2023 (97)
2026 (95)
2021 (93)
2012 (80)
2014 (75)
2015 (70)
2010 (69)
2019 (65)
2013 (61)
2020 (60)
2016 (59)
2011 (57)
2018 (54)
2017 (54)
2009 (38)
2008 (35)
2007 (20)
2006 (10)
2004 (7)
2005 (6)

CHEBI ID

CHEBI:16737 (78)
CHEBI:16919 (71)
CHEBI:15891 (70)
CHEBI:30769 (69)
CHEBI:15428 (65)
CHEBI:17368 (59)
CHEBI:16704 (56)
CHEBI:17596 (55)
CHEBI:15354 (54)
CHEBI:17295 (54)
CHEBI:18257 (54)
CHEBI:17895 (53)
CHEBI:28044 (53)
CHEBI:30915 (52)
CHEBI:15843 (52)
CHEBI:16015 (52)
CHEBI:27897 (52)
CHEBI:15756 (51)
CHEBI:28300 (50)
CHEBI:15741 (50)
CHEBI:16449 (50)
CHEBI:16335 (50)
CHEBI:18237 (49)
CHEBI:18012 (49)
CHEBI:18211 (49)
CHEBI:17822 (49)
CHEBI:16811 (49)
CHEBI:32816 (48)
CHEBI:15971 (48)
CHEBI:17568 (48)

Metabolite Name

Taurine (46)
Creatine (45)
Creatinine (44)
Hypoxanthine (40)
L-Histidine (37)
Citric acid (37)
Uridine (37)
L-Tyrosine (36)
Inosine (36)
Xanthine (35)
Uric acid (34)
L-Phenylalanine (33)
L-Glutamine (32)
Ornithine (32)
Cholic acid (31)
Choline (30)
Hippuric acid (30)
L-Arginine (29)
L-Proline (29)
Adenosine (29)
Glycine (28)
Uracil (28)
Deoxycholic acid (27)
Azelaic acid (27)
Palmitic acid (27)
Citrulline (26)
Leucine (26)
L-Serine (26)
L-Lysine (25)
L-Valine (25)

First Public Date

2014 (101)
2025 (68)
2024 (67)
2026 (54)
2023 (32)
2022 (31)
2021 (28)
2017 (21)
2020 (20)
2019 (20)
2018 (20)
2015 (13)
2016 (3)
2013 (3)

Classification

bacteria (2)
protozoa (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (2)
4x(2)H labeled dimethylated residue (1)
N6 (1)
N6-dimethyl-L-lysine (1)

Study status

Completed (10)
Not yet recruiting (6)
Recruiting (5)

Study type

Transcription profiling by array (429)
RNA-seq of coding RNA (130)
RNA-seq of coding RNA from single cells (72)
Methylation profiling by array (28)
Comparative genomic hybridization by array (19)
ChIP-seq (19)
RNA-seq of total RNA (12)
Single nucleus RNA sequencing (11)
MicroRNA profiling by array (11)
DNA-seq (11)
RNA-seq of non coding RNA (11)
Human - High-throughput sequencing (10)
Spatial transcriptomics by high-throughput sequencing (9)
Methylation profiling by high throughput sequencing (9)
ChIP-chip by tiling array (8)
Genotyping by array (8)
Other (8)
Proteomic profiling by array (8)
Unknown experiment type (7)
Bisulfite-seq (7)
ScATAC-seq (7)
ChIP-chip by array (6)
Animal - High-throughput sequencing (4)
Cell line - High-throughput sequencing (4)
MicroRNA profiling by high throughput sequencing (4)
Human - Single-cell sequencing (3)
Human - One-color microarray (3)
Cell line - Single-cell sequencing (2)
RNA-seq of non coding RNA from single cells (2)
Animal - One-color microarray (2)

Release Date

2022 (2416)
2025 (2322)
2023 (2082)
2021 (1997)
2024 (1843)
2020 (1549)
2019 (1427)
2018 (903)
2017 (633)
2026 (339)
2016 (327)
2014 (278)
2015 (264)
2013 (178)
2012 (146)
2011 (101)
2010 (101)
2009 (54)
2008 (50)
2007 (29)
2004 (18)
2006 (17)
2005 (11)
2003 (8)
2002 (3)
2000 (1)
1999 (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (17)
Tianjin Medical University General Hospital (3)
Division of Cell Matrix Biology & Regenerative Medicine (L5) / Division of Cell Matrix Biology & Regenerative Medicine, University of Manchester (3)
The University of Melbourne (3)
Institute of Clinical Sciences, Department of Oncology, Lund University, Sweden (2)
Department of Molecular Biology and Genetics, Lab of Proteome Research, Federal Research and Clinical Centre of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, Moscow, 119992, Russia (2)
Acupuncture and Tuina School/Third Teaching Hospital, Chengdu University of Traditional Chinese Medicine (2)
Research Officer|Proteomics and Small Molecule Mass Spectrometry Laboratory | Central Analytical Research Facility (CARF)| Queensland University of Technology | Address: Level 6, P Block, Gardens Point Campus, 2 George St Brisbane QLD 4000 (2)
Institute of Bioinformatics, Bangalore - 560066, India (2)
The University of Sydney (2)
Basilbiotech, Incheon 22002, Republic of Korea. (2)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (2)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (2)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (2)
Cardiovascular Biochemistry Group, Research Institute of the Hospital de la Santa Creu i Sant Pau (IIB Sant Pau), Barcelona, Spain (1)
Department of Medical Sciences iBiMED University of Aveiro (1)
The Second Affiliated Hospital of Chengdu Medical College (China National Nuclear Corporation 416 Hospital), (1)
National Key Laboratory of Medical Molecular Biology and Department of Immunology; Institute of Basic Medical Sciences; Chinese Academy of Medical Sciences (1)
School of Biosciences Deputy Director Faculty of Science Mass Spectrometry Centre School of Biosciences University of Sheffield Sheffield, S10 2TN United Kingdom (1)
Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China (1)
INSERM IRSD U1220 CHU PURPAN PLACE DU DOCTEUR BAYLAC CS 60039 31024 TOULOUSE CEDEX 3 FRANCE (1)
The Second Affiliated Hospital of Zhejiang University, Medicine Cancer Institute (1)
Monash University Molecular Biology and Biochemistry (1)
Department of Burns and Reconstructive Surgery, Xiangya Hospital, Central South University, Changsha, Hunan, P.R. China. (1)
ProCan and the Cell Signalling Units, Children’s Medical Research Institute, The University of Sydney, 214 Hawkesbury Rd, Westmead, NSW Australia, 2145. (1)
Research Group "Sports Medicine", Institute for Sport and Sport Science, TU Dortmund University (1)
Department of Molecular Sciences, Faculty of Science and Engineering, Macquarie University, Sydney, NSW, Australia (1)
Third Hospital of Hebei Medical University (1)
Reserch Scientist, Institute of Bioinformatics, Bangalore (1)
Henan Institute of Medical and Pharmaceutical Sciences, Zhengzhou University, Henan 450052, China (1)