Ev-dna - OmicsDI

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Unknown (414)
Genomics (154)
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Organisms

Andropogon gerardi (68)
Bacteria (68)
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Human alphaherpesvirus 1 strain 17 (68)
Human alphaherpesvirus 1 strain KOS (68)
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Human herpesvirus 2 strain 186 (68)
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Rattus norvegicus (68)
Homo sapiens (58)
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Organisms

Homo sapiens (61)
Mus musculus (28)
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Nicotiana attenuata (3)
Saccharomyces cerevisiae (2)
Arabidopsis thaliana (2)
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human metagenome (1)
wastewater metagenome (1)
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Repository

ENA (138)
pride (68)
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Tissue

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Disease

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Technology Type

Mass Spectrometry (68)
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Instrument Platform

NextSeq 500 (5)
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NEXTflex small RNA library preparation kit v4; TruSeq exome RNA library preparation kit (Illumina); High Sensitivity DNA ScreenTape D1000 (1)
QIAzol and miRNeasy micro kits; Bioanalyzer TapeStation 2100; Qubit microRNA assay (1)
None (1)
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Publication Date

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2025 (31)
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2022 (12)
2019 (8)
2014 (8)
2020 (5)
2016 (5)
2013 (4)
2010 (4)
2007 (4)
2021 (3)
2015 (3)
2011 (3)
2017 (2)
2008 (2)
2018 (2)
2012 (1)
2006 (1)
2005 (1)

CHEBI ID

CHEBI:52117 (1)
CHEBI:22194 (1)
CHEBI:64850 (1)
CHEBI:30818 (1)
CHEBI:28850 (1)
CHEBI:17626 (1)
CHEBI:16174 (1)
CHEBI:191950 (1)
CHEBI:45658 (1)
CHEBI:16192 (1)
CHEBI:16497 (1)
CHEBI:18077 (1)
CHEBI:17625 (1)
CHEBI:14336 (1)
CHEBI:16300 (1)
CHEBI:73034 (1)
CHEBI:68568 (1)
CHEBI:28939 (1)
CHEBI:73031 (1)
CHEBI:36314 (1)
CHEBI:73849 (1)
CHEBI:24298 (1)
CHEBI:18349 (1)
CHEBI:30865 (1)
CHEBI:17720 (1)
CHEBI:17755 (1)
CHEBI:48928 (1)
CHEBI:17622 (1)
CHEBI:28862 (1)
CHEBI:30838 (1)

Metabolite Name

Lysotracker Red DND-99 (1)
Glycine 13C2-15N (1)
2-Hydroxybutyric acid (AHB) (1)
Erythrose 4-phosphate (1)
Carbamoyl Aspartate (1)
Asymmetric dimethylarginine (ADMA) (1)
Alpha-Ketoglutarate (aKG) (1)
S-Adenosyl-L-methionine (SAM) (1)
Gamma-aminobutyric acid (GABA) (1)
Formiminoglutamic acid (FIGLU) (1)
5-Hydroxyindole-3-Acetate (1)
S-Adenosyl-L-Homocysteine (SAH) (1)
P-Aminobenzoate (1)
Deoxycytidine (1)
Cis-urocanic acid (1)
Acetyl CoA (1)
3-hydroxyisobutyric acid (1)
Dihydroxyacetone phosphate (1)
TMAO (1)
Folate (1)
Deoxyguanosine (1)
DATP (1)
Deoxyuridine (1)
Trans-urocanic acid (1)
4-Hydroxybutyric acid (1)
DADP (1)
PRPP (1)
S-methylcysteine (1)
N-acetylphenylalanine (1)
7-methylguanosine (1)

First Public Date

2025 (24)
2024 (22)
2019 (18)
2026 (15)
2023 (13)
2020 (12)
2022 (8)
2017 (7)
2021 (6)
2018 (5)
2014 (5)
2016 (2)
2013 (1)

Classification

bacteria (4)
viruses (1)

Modification

Not available (1)

Study type

Transcription profiling by array (27)
RNA-seq of coding RNA (6)
RNA-seq of non coding RNA (4)
High-throughput sequencing (2)
Transcription profiling by RT-PCR (2)
ChIP-seq (2)
DNA-seq (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
Bisulfite-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2021 (64)
2022 (55)
2024 (54)
2023 (54)
2025 (51)
2020 (46)
2019 (31)
2018 (19)
2017 (14)
2016 (14)
2015 (12)
2014 (12)
2026 (8)
2013 (6)
2011 (5)
2010 (4)
2007 (4)
2012 (2)
2008 (2)
2006 (2)
2005 (2)
2009 (1)
2003 (1)
1999 (1)

Lab affiliation

Assistant Professor, Departments of Oncology & Pathology, McGill University Principal Investigator, Cancer Research Program, MUHC-RI 1001 Decarie Blvd, EM2.2218 514.934.1934 ext 76307 Montréal, Canada (2)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse, France (2)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (2)
OncoProteomics Laboratory, Dept of Medical Oncology, Amsterdam University Medical Centers, Amsterdam, The Netherlands (2)
WEHI (2)
1 Children’s Cancer and Blood Foundation Laboratories, Departments of Pediatrics, and Cell and Developmental Biology, Drukier Institute for Children’s Health, Meyer Cancer Center, Weill Cornell Medicine, New York, NY, USA (1)
1Research Institute of the McGill University Health Centre, Montreal, QC, Canada 2Department of Pathology, McGill University, Montreal, QC, Canada 3Gerald Bronfman Department of Oncology, McGill University, Montreal, QC, Canada (1)
Bioanalytical Mass Spectrometry Group Max-Planck-Institute for Multidisciplinary Sciences Goettingen, Germany (1)
Biocev-Institute of Microbiology, The Czech Academy of Sciences, Prague, Czech Republic (1)
Brainstorm Brain Cancer Research, Brain and Mind Centre, University of Sydney, NSW, Australia School of Life and Environmental Science, University of Sydney, New South Wales, Australia (1)
CABIMER (1)
CABIMER, ES (1)
CRUK Beatson Institute, Switchback Road, Glasgow G61 1BD, UK. (1)
Cellular Proteomics, Helmholtz Centre for Infection Research, Braunschweig, Germany (1)
Center for Integrative Genomics (CIG) University of Lausanne (UNIL) Quartier Sorge, Genopode room 3030 CH-1015 Lausanne Switzerland (1)
Centre for Liver Research, School of Digestive and Liver diseases, IPGME&R, Kolkata- 700020, West bengal , INDIA (1)
Core Facilities – Clinical Proteomics and Metabolomics, IRCCS Istituto G. Gaslini, Genova, Italy (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Chemistry and Chemical Biology, Barnett Institute of Chemical & Biological Analysis, Northeastern University, Boston, MA, United States (1)
Department of Chemistry, University of Kansas, Lawrence, KS, United States (1)
Department of Immunobiology, University of Lausanne (155 chemin des Boveresses 1066 Epalinges Switzerland) (1)
Department of Infectious Diseases, School of Immunology and Microbial Sciences, King’s College London, UK (1)
Department of Molecular, Cellular, and Developmental Biology (MCDB) at University of California Santa Barbara (UCSB) (1)
Department of Oncological Sciences, Department of Dermatology, The Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai (1)
Department of Radiation Oncology Associate Professor (1)
Dept. of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands (1)
Dept. of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands. (1)
Deptartment of Cellular and Molecular Pharmacology, School of Medicine, University of California San Francisco (UCSF), USA (1)
Developmental Biology of the Innate Immune System Life & Medical Sciences Institute (LIMES) University of Bonn, Germany (1)
Director of Proteomics Facility at IMBB (ProFI) (1)

Tags

pathogen (5)
pathogen:bacterium (4)
pathogen:virus (1)
wastewater (1)

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Unique structural configuration of EV-DNA primes Kupffer cell-mediated anti-tumor immunity to prevent metastatic progression

Extracellular vesicles (EVs) transport biomolecules that mediate intercellular communication. We previously showed that EVs contain DNA (EV-DNA) representing the entire genome. However, the mechanism of EV-DNA packaging and its role in cancer remains elusive. Here, we demonstrate that the majority o...

ORGANISM(S): Homo sapiens (Human)

2024-09-23 | PXD056104 | Pride

Amplicon Sequencing of gRNAs from Brunello CRISPR mutagenized A549 and U87-MG cells after live/dead selection with EV-D68 IL

With the near eradication of poliovirus due to global vaccination campaigns, attention has shifted to other enteroviruses that can cause polio-like paralysis syndrome (now termed acute flaccid myelitis (AFM)). In particular, enterovirus D68 (EV-D68) is believed to be the main driver of epidemic outb...

ORGANISM(S): Homo sapiens

2025-02-25 | E-MTAB-14765 | biostudies-arrayexpress

EV-ADD, a database for EV-associated DNA in human liquid biopsy samples.

Not available

S-EPMC9587709 | biostudies-literature

Efficient Small Extracellular Vesicles (EV) Isolation Method and Evaluation of EV-Associated DNA Role in Cell-Cell Communication in Cancer.

Not available

S-EPMC9099953 | biostudies-literature

Influential factors on urine EV DNA methylation detection and its diagnostic potential in prostate cancer.

Not available

S-EPMC10909848 | biostudies-literature

Packaging of DNA:RNA hybrids in extracellular vesicles and their horizontal transfer in cancer

RNAs isolated from ZR751 (acceptors/responders) and BT474 (non-acceptors/non-responders) cells following education with EV-Hybridlow (EV-DNA from normoxic cancer cells) and EV-Hybridhigh (EV-DNA from IH-derived cancer cells) were sequenced.

ORGANISM(S): Homo sapiens

2020-12-31 | E-MTAB-7586 | biostudies-arrayexpress

Cisplatin Radiosensitization of DNA Irradiated with 2-20 eV Electrons: Role of Transient Anions.

Not available

S-EPMC4716812 | biostudies-literature

EV DNA from pancreatic cancer patient-derived cells harbors molecular, coding, non-coding signatures and mutational hotspots.

Not available

S-EPMC11882941 | biostudies-literature

Low-Energy (5-20 eV) Electron-Induced Single and Double Strand Breaks in Well-Defined DNA Sequences.

Not available

S-EPMC9189919 | biostudies-literature

Comparative Panel Sequencing of DNA Variants in cf-, ev- and tumorDNA for Pancreatic Ductal Adenocarcinoma Patients.