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ProteomicsProteomics analysis of Pseudomonas putida F1: From Early-Exponential to Late-Stationary
The genus Pseudomonas is a very versatile and heterogeneous group whose members regularly serve as model system of various applications. These include pathogens and rhizospheric strains as well as organisms with exceptional broad substrate ranges. Nevertheless, when it comes to physiological adaptat...
ORGANISM(S): Pseudomonas putida (strain F1 / ATCC 700007) 
2015-07-24 | PXD001219 | Pride
Growth Microbial proteomics Stationary Rpos Pseudomonas Exponential 
TranscriptomicsStpA prevents RpoS-dependent transcription during mid-exponential growth in S. Typhimurium
StpA is a paralogue of the nucleoid associated protein H-NS that is conserved in a range of enteric bacteria and had no known function in Salmonella enterica serovar Typhimurium. Here, we show that 5% of the Salmonella genome is regulated by StpA, which contrasts with the situation in Escherichia co...
ORGANISM(S): Salmonella typhimurium SL1344 
2010-06-20 | E-GEOD-18428 | biostudies-arrayexpress
ProteomicsProtein misfolding involving entanglements provides a structural explanation for the origin of stretched-exponential refolding kinetics
Stretched-exponential protein refolding kinetics, first observed decades ago, were attributed to a nonnative ensemble of structures with parallel, non-interconverting folding pathways. However, the structural origin of the large energy barriers preventing interconversion between these folding pathwa...
ORGANISM(S): Escherichia coli 
2025-03-18 | PXD053582 | Pride
Folding Crosslinking mass spectrometry Stretched-exponential kinetics 
ProteomicsProtein misfolding involving entanglements provides a structural explanation for the origin of stretched-exponential refolding kinetics
Stretched-exponential protein refolding kinetics, first observed decades ago, were attributed to a nonnative ensemble of structures with parallel, non-interconverting folding pathways. However, the structural origin of the large energy barriers preventing interconversion between these folding pathwa...
ORGANISM(S): Escherichia coli 
2025-03-18 | PXD053579 | Pride
Limited proteolisys mass spectrometry Stretched-exponential kinetics Refolding 
GenomicsRIL-seq analysis of B. pertussis Tohama I in exponential phase
BP exponential RIL-seq
PRJEB79241 | ENA
GenomicsRNA-seq of wild type Mycobacterium smegmatis mc2 155 (exponential and stationary phase) and Ms1 deletion strain (exponential and stationary phase)
RNA-seq of wild type Mycobacterium smegmatis mc2 155 (exponential and stationary phase) and Ms1 deletion strain (exponential and stationary phase)
PRJEB27728 | ENA
TranscriptomicsTranscription profiling of E.coli wild type vs RpoS mutants during exponenitail growth
This study is to identify the RpoS regulon in MG1655 in early exponential growth. RNA samples from wild type or rpoS mutants were extracted using acidic hot phenol method and hybridized to Affymetrix E. coli Antisense Genome Array. Experiment Overall Design: A precise rpoS deletion mutant of MG1655 ...
ORGANISM(S): Escherichia coli K12 
2008-06-16 | E-GEOD-9814 | biostudies-arrayexpress
ProteomicsProteome of Francisella novicida U112 in exponential and stationary growth phase and co-IPs with cas12 promoter or MtvS1-His as bait
Whole cell lysate proteome of Francisella novicida U112 in exponential and stationary growth phase and pulldown experiments with cas12 promoter DNA or MtvS1-His as bait.
ORGANISM(S): Francisella tularensis subsp. novicida (strain U112) Bacteria 
2026-07-13 | PXD068088 | Pride
Mtvs1 Francisella Exponental phase Stationary phase 
TranscriptomicsRole of stpA in Salmonella typhimurium
This SuperSeries is composed of the following subset Series: GSE18424: The effect of stpA deletion on S. Typhimurium gene expression during growth in rich medium GSE18428: StpA prevents RpoS-dependent transcription during mid-exponential growth in S. Typhimurium GSE18450: Identification of StpA-bind...
ORGANISM(S): Salmonella typhimurium SL1344 
2010-06-21 | E-GEOD-18452 | biostudies-arrayexpress
GenomicsDefining the impact of exoribonucleases in the shift between exponential and stationary phases
Defining the impact of exoribonucleases in the shift between exponential and stationary phases
PRJNA482775 | ENA
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