Fabian J J - OmicsDI

Show results for

Unknown (333)
Proteomics (57)
Transcriptomics (26)
Genomics (15)
Multiomics (13)
Metabolomics (8)
Models (6)
Other (1)

Organisms

Homo sapiens (39)
Schizophyllum commune H4-8 (29)
Mycobacterium tuberculosis SP7 (29)
Oryza sativa Japonica Group (29)
Crotalus durissus terrificus (29)
Eriocheir sinensis (29)
Candidatus Endoriftia persephonae (29)
Mycobacterium tuberculosis SP10 (29)
Mycobacterium tuberculosis SP13 (29)
Cotesia typhae (29)
Mycobacterium tuberculosis SP22 (29)
Cepaea nemoralis (29)
Enterobacter ludwigii (29)
Corynebacterium diphtheriae bv. mitis str. ISS 3319 (29)
Olea europaea (29)
Chlamydomonas reinhardtii (29)
Lama (29)
Planorbella pilsbryi (29)
Wolbachia sp. wMelPop (29)
Pyricularia oryzae P131 (29)
Mus musculus (12)
Salmonella enterica (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Pan troglodytes (1)
Cricetulus griseus (1)
Candida albicans (1)
Rattus norvegicus (1)
Danio rerio (1)
Arabidopsis thaliana (1)
Cortinarius (1)

Repository

biostudies-arrayexpress (30)
pride (29)
PeptideAtlas (14)
EGA (11)
MassIVE (11)
MetaboLights (8)
BioModels (5)
jPOST (2)
PAXDB (2)
FAIRDOMHub (1)

Tissue

Others (11)
Epithelial cell (7)
Cell culture (6)
Kidney cell (4)
Plasma Non-glyco (3)
Ovary (3)
Somatic cell (2)
Urine (2)
Colon (2)
Retina (2)
Embryonic stem cell (2)
Layer of retina (1)
Alveolar sac (1)
Endocardial cell (1)
Jump-In-T-REx HEK293 cell (1)
Ovarian follicle (1)
Cardiac muscle myoblast (1)
Fibroblast of cardiac tissue (1)
Endothelial cell (1)
Early embryonic cell (1)
Saliva (1)
HeLa cell (1)
Oocyte (1)
Skin (1)
Stem cell (1)
Myeloid cell (1)
Heart (1)
Brain (1)
Liver (1)

Disease

Glaucoma (2)
Colon cancer (2)
Hodgkin's lymphoma (1)
Mature T-cell and NK-cell lymphoma (1)
Alveolar rhabdomyosarcoma (1)
Myocardial infarction (1)
Cutaneous malignant melanoma 1 (1)
Malignant neoplasm of ovary (1)
COVID-19 (1)
Osteosarcoma (1)
Cholangiocarcinoma (1)
Cervix carcinoma (1)
Glioblastoma (1)

Technology Type

Mass Spectrometry (29)
Shotgun proteomics (12)
Bottom-up proteomics (10)
Data-dependent acquisition (7)
Mass spectrometry (6)
Gel-based experiment (6)
Affinity purification coupled with mass spectrometry proteomics (5)
SWATH MS (4)
Mass spectrometry assay (2)
Data-independent acquisition (2)
Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Top-down proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

LTQ Orbitrap Velos (16)
Illumina NovaSeq 6000 (4)
Liquid Chromatography MS - positive - reverse phase (4)
TripleTOF 5600 (2)
LTQ Orbitrap Elite (2)
LTQ Orbitrap Classic (Thermo Scientific) (2)
I.DOT (Dispendix), C.WASH (CYTENA), Qubit Fluorometer (Thermo Fisher Scientific), Agilent TapeStation 4200 (1)
BD FACSDiscover S8 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
LTQ Velos (1)
LTQ Orbitrap XL (1)
TimsTOF (1)
Exactive Plus (1)
TripleTOF 6600 (1)
TimsTOF SCP (1)
Orbitrap Exploris 480 (1)
Q Exactive (1)
Flow injection analysis MS - positive (1)
Flow injection analysis MS - negative (1)
Liquid Chromatography MS - (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2012 (16)
2015 (12)
2022 (9)
2025 (9)
2026 (8)
2017 (8)
2024 (6)
2020 (6)
2010 (6)
2019 (5)
2023 (4)
2021 (4)
2018 (3)
2013 (2)
2016 (1)
2014 (1)
2011 (1)
2007 (1)

UNIPROT ID/AC

P29350 (13)
P20963 (2)
P35225 (2)
P78552 (2)
P29597 (2)
O60674 (2)
P42229 (2)
P51692 (2)
P24394 (2)
LAMB3_MOUSE (2)
COLQ_MOUSE (2)
CFA53_MOUSE (2)
MMP9_MOUSE (2)
S6A14_MOUSE (2)
LOXL3_MOUSE (2)
CFA57_MOUSE (2)
SG3A2_MOUSE (2)
ABCA5_MOUSE (2)
CC151_MOUSE (2)
Q80UR4_MOUSE (2)
SPAT6_MOUSE (2)
S39A8_MOUSE (2)
MCPT8_MOUSE (2)
SP17_MOUSE (2)
VGFR1_MOUSE (2)
DLRB2_MOUSE (2)
LFNG_MOUSE (2)
PAR6B_MOUSE (2)
Q14627 (1)
O14543 (1)

ENSEMBL ID

ENSG00000170477 (7)
ENSG00000229353 (3)
ENSG00000147251 (1)

CHEBI ID

CHEBI:16811 (4)
CHEBI:17126 (4)
CHEBI:18272 (3)
CHEBI:16610 (3)
CHEBI:27570 (3)
CHEBI:18237 (3)
CHEBI:22660 (3)
CHEBI:17659 (3)
CHEBI:16919 (3)
CHEBI:16737 (3)
CHEBI:17992 (3)
CHEBI:17858 (3)
CHEBI:15428 (3)
CHEBI:15891 (3)
CHEBI:25094 (3)
CHEBI:30769 (3)
CHEBI:24898 (3)
CHEBI:16027 (3)
CHEBI:33699 (2)
CHEBI:86468 (2)
CHEBI:16955 (2)
CHEBI:17994 (2)
CHEBI:27465 (2)
CHEBI:37713 (2)
CHEBI:16578 (2)
CHEBI:86480 (2)
CHEBI:86032 (2)
CHEBI:18199 (2)
CHEBI:86066 (2)
CHEBI:73028 (2)

Metabolite Name

5'-Thymidylic acid (2)
O-phospho-D-serine (2)
N-Acetyl-D-glucosamine 1,6-bisphosphate (2)
5'-Guanylic acid (2)
Guanosine 5'-diphosphate (2)
Uridine triphosphate (2)
Shikimate-3-phosphate (2)
5'-phosphoribosyl-N-formylglycinamide (2)
Adenosine diphosphate (2)
Glucose-6 phosphate (2)
Ribose 1,5-bisphosphate (2)
Sedoheptulose 1,7-bisphosphate (2)
UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine (2)
Uridine diphosphate glucose (2)
Uridylic acid (2)
Adenosine 5'-monophosphate (2)
SAICAR (2)
UDP-GlcNAc (2)
Creatine (2)
Adenosine triphosphate (2)
Guanosine triphosphate (2)
N-Acetyl-L-glutamic acid (2)
6-phosphogluconic acid (2)
Carnitine (2)
Acetyl-CoA (2)
Spermidine (2)
Methionine (2)
Taurine (2)
Glycine (2)
Uridine 5'-diphosphate (2)

IsPrivate

False (5)

Modelling Approach

Ordinary differential equation model (5)

Study type

RNA-seq of coding RNA (10)
Transcription profiling by array (8)
ChIP-seq (4)
RNA-seq of coding RNA from single cells (2)
Unknown experiment type (1)
Comparative genomic hybridization by array (1)
ATAC-seq (1)
Other (1)
Methylation profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2023 (54)
2025 (46)
2021 (45)
2022 (42)
2024 (36)
2015 (23)
2020 (21)
2019 (19)
2018 (16)
2017 (14)
2026 (11)
2016 (7)
2010 (7)
2013 (5)
2014 (5)
2012 (5)
2011 (2)
2007 (2)
2009 (1)
2008 (1)
2004 (1)

Lab affiliation

CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria (4)
IMBA - Institute of Molecular Biotechnology Dr. Bohrgasse 3 1030 Vienna Austria (3)
Council for Scientific and Industrial Research (2)
Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna BioCenter (VBC), 1030 Vienna, Austria. (2)
Unidad de Investigación Biomédica en Cáncer, Instituto Nacional de Cancerología-Instituto de Investigaciones Biomédicas, UNAM/ Dirección General, Instituto Nacional de Medicina Genómica, Periférico Sur 4809, Arenal Tepepan, 1450 Tlalpan, Ciudad de México (1)
St. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria; CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria. (1)
Experimental Ophthalmology, Department of Ophthalmology, Mainz, Rheinland-Pfalz, Germany (1)
Experimental Ophthalmology, University Medical Center Mainz (1)
Proteomics and Signal Transduction Max Planck Institute of Biochemistry Am Klopferspitz 18 82152 Martinsried (1)
Department of Oncology, Children’s Hospital Zurich, Steinwiesstrasse 75, 8032 Zurich, Switzerland (1)
Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin, Germany (1)
2Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna BioCenter (VBC), 1030 Vienna, Austria. (1)
The Novo Nordisk Foundation Center for Protein Research University of Copenhagen Blegdamsvej 3b, Building 6 2200 Copenhagen Denmark (1)
Prof. Dr. Matthias Mann Max Planck Institute of Biochemistry Am Klopferspitz 18 82152 Martinsried +49 89 8578-2557 (1)
Hepatology Laboratory, Solid Tumors Program, CIMA, CCUN, University of Navarra (Pamplona). Spain (1)
Center for Chromosome Stability, Institute for Cellular and Molecular Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, 2200, Denmark (1)
Protein Signaling Program, Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, DK-2200 Copenhagen, Denmark (1)
Institute of Molecular Systems Biology, Department of Biology, ETH Zurich, Zurich, Switzerland (1)
Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (1)
Raymond H. Wittcoff Distinguished Professor and Head Department of Biochemistry and Molecular Biophysics Washington University School of Medicine St. Louis, MO 63110 (1)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (1)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Ghent University, B-9000 Ghent, Belgium (1)

Previous page
1 / 45
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 45
Next page

Sort by:

Relevance

Page size

A Fetal Brain magnetic resonance Acquisition Numerical phantom (FaBiAN).

Not available

S-EPMC9127105 | biostudies-literature

Repression and derepression of minus-strand synthesis in a plus-strand RNA virus replicon.

Not available

S-EPMC434078 | biostudies-literature

Konrath2020_p53_signaling_model

The ODE model is based on Batchelor et al., Mol. Syst. Biol. 7 (2011) and was extended by introducing explicit descriptions of the transcription and translation processes of Mdm2 mRNA and Wip1 mRNA. To capture the heterogeneous single cell dynamics of p53 with an ODE model, we clustered the time cou...

2020-05-07 | MODEL2004300002 | BioModels

Identification of alpha-satellite RNA interacting proteins

We set out to identify proteins that bind alpha-satellite ncRNAs in HCT-116 and SW-480 colorectal cancer human cell lines. We performed RNA pulldown followed by mass spectrometry identification of the associated proteins. Among the identified proteins, we observed a statistical overrepresenttion of ...

ORGANISM(S): Homo sapiens (Human)

2022-08-12 | PXD024582 | Pride

A Comparison of Different Textured and Non-Textured Anti-Reflective Coatings for Planar Monolithic Silicon-Perovskite Tandem Solar Cells.

Not available

S-EPMC9131309 | biostudies-literature

The N250 event-related potential as an index of face familiarity: a replication study.

Not available

S-EPMC8170192 | biostudies-literature

Apoptotic cells in mouse blastocysts are eliminated by neighbouring blastomeres.

Not available

S-EPMC8085119 | biostudies-literature

High-entropy oxychloride increasing the stability of Li-sulfur batteries.

Not available

S-EPMC10245222 | biostudies-literature

The Two Faces of the Liquid Ordered Phase.

Not available

S-EPMC8842317 | biostudies-literature

ATAC-seq of Mus musculus embryonic cell types in response to Pbx1 knockout

ATAC-seq was performed, mapped, and analyzed as previously described (PMID: 34446717: \\"ATAC-seq was performed on 50,000 cells per replicate as described in Buenrostro et al. (with modifications based on Corces et al.), on EpiSCs and PSM-differentiated cell populations at desired time-points. Libra...

ORGANISM(S): Mus musculus

2023-12-01 | E-MTAB-13407 | biostudies-arrayexpress

Previous page
1 / 45
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 45
Next page

Sort by:

Relevance

Page size

446 Results

Show results for

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

IsPrivate

Modelling Approach

Study type

Release Date

Lab affiliation

OmicsDI is part of the ELIXIR infrastructure

Tweets