Sort   by:  
 Page size 
ProteomicsncRNA DUBR RAP-MS in HCT116 cells
Non-coding RNAs (ncRNAs) are finely tuned cellular regulators important for human cell growth and cancer progression. DUBR (also known as linc00883) is a nuclear ncRNA first discovered in mice for its role in regulating myoblast differentiation through interactions with chromatin and DNA methyltrans...
ORGANISM(S): Homo sapiens (Human) 
2025-05-07 | PXD057811 | Pride
Dubr Hct116 Ncrna Rap-ms 
ProteomicsDiscovery of RUF6 ncRNA interacting proteins involved in P. falciparum immune evasion
RUF6 is a ncRNA gene family that is transcribed by RNA Polymerase III but actively regulates the Pol II-transcribed var virulence gene family. Understanding how RUF6 ncRNA connect to downstream effectors is lacking. We developed an RNA-directed proteomic discovery (ChIRP-MS) protocol to identify in ...
ORGANISM(S): Plasmodium falciparum (isolate 3D7) 
2022-11-15 | PXD036801 | Pride
Var genes Malaria virulence Ruf6 ncrna Plasmodium falciparum Antigenic variation 
ProteomicsMapping microproteins and ncRNA-encoded polypeptides in different mouse tissues
Small open reading frame encoded peptides (SEPs), also called microproteins, play a vital role in biological processes. Plenty of their open reading frames are located on the non-coding RNA (ncRNA) range. Recent research has demonstrated that ncRNA-encoded polypeptides have essential functions and e...
ORGANISM(S): Mus Musculus 
2021-04-03 | PXD025158 |
GenomicsThe PhoP-dependent ncRNA Mcr7 modulates the TAT secretion system in Mycobacterium tuberculosis [ChIP-Seq]
The PhoPR two-component system is essential for virulence in Mycobacterium tuberculosis where it controls expression of approximately 2% of the genes, including those for the ESX-1 secretion apparatus, a major virulence determinant. Mutations in phoP lead to compromised production of pathogen-specif...
ORGANISM(S): Mycobacterium tuberculosis H37Rv 
2014-06-02 | E-GEOD-54239 | biostudies-arrayexpress
TranscriptomicsThe PhoP-dependent ncRNA Mcr7 modulates the TAT secretion system in Mycobacterium tuberculosis [RNA-Seq]
The PhoPR two-component system is essential for virulence in Mycobacterium tuberculosis where it controls expression of approximately 2% of the genes, including those for the ESX-1 secretion apparatus, a major virulence determinant. Mutations in phoP lead to compromised production of pathogen-specif...
ORGANISM(S): Mycobacterium tuberculosis H37Rv 
2014-06-02 | E-GEOD-54240 | biostudies-arrayexpress
TranscriptomicsncRNA expression, including snoRNAs, across 11 tissues using polyA-neutral amplification
ncRNA expression, including snoRNAs, across 11 tissues using polyA-neutral amplification
ORGANISM(S): Homo sapiens 
2010-07-15 | E-MTAB-305 | biostudies-arrayexpress
TranscriptomicsKYSE170 transfected with ncRNA or miR-210
MicroRNAs are small non-coding RNA species, some of which are playing important roles in malignancies. However, roles of miR-210 in cancer have yet to be unknown and controversial. Here, we found the expression level of miR-210 is downregulated in human esophageal squamous cell carcinoma and its cel...
ORGANISM(S): Homo sapiens 
2011-01-05 | E-GEOD-20637 | biostudies-arrayexpress
GenomicsP-TEFb function in ncRNA transcription
P-TEFb function in ncRNA transcription
PRJNA483416 | ENA
ProteomicsFA-SAT ncRNA interactome
FA-SAT is a satellite DNA sequence present and transcribed in many Bilateria species, what may anticipate a conserved and significant function in these genomes. Here we prove that in cat and human cells, FA-SAT satellite transcripts play a nuclear function at the G1 phase of the cell cycle. We ident...
ORGANISM(S): Bos taurus (Bovine) Homo sapiens (Human) Felis silvestris 
2020-03-19 | PXD010081 | Pride
Fa-sat  satellite dna  non-coding rna  apoptosis  interactome  swath-ms 
ProteomicsIdentification of NEAT1-ncRNA binding proteins in vitro
We conducted experiments in which I mixed 293T cell lysates with various fragments of NEAT1-ncRNA. I then performed pull-down assays to isolate the RNA and its associated proteins, subsequently identifying the proteins binding to each fragment using mass spectrometry.
ORGANISM(S): Homo Sapiens (human) 
2023-08-23 | PXD044279 | JPOST Repository
Sort   by:  
 Page size