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ProteomicsncRNA DUBR RAP-MS in HCT116 cells
Non-coding RNAs (ncRNAs) are finely tuned cellular regulators important for human cell growth and cancer progression. DUBR (also known as linc00883) is a nuclear ncRNA first discovered in mice for its role in regulating myoblast differentiation through interactions with chromatin and DNA methyltrans...
ORGANISM(S): Homo sapiens (Human) 
2025-05-07 | PXD057811 | Pride
Dubr Hct116 Ncrna Rap-ms 
ProteomicsProteome-wide identification lncRNA CCAT1 directly binding proteins by RAP-MS
We purify and identify CCAT1 binding proteins by RAP-MS. As a result, we identified out more than 600 CCAT1 binding proteins and more than 60% of them are RNA binding proteins recorded by RBPs database EuRBPDB. Among the identified CCAT1 binding proteins, Vimentin is a crucial protein. Additionally,...
ORGANISM(S): Homo Sapiens 
2020-11-26 | PXD022774 |
ProteomicsINO80E_HIRIP3_RNA_duplex_proteins_RAP_MS
MS data from the RAP-MS experiment performed for identyfication of proteins that interact with HIRIP3 and INO80E RNA duplex.
ORGANISM(S): Homo sapiens (Human) 
2025-02-21 | PXD060587 | Pride
Rna duplex  ino80e  hirip3 
ProteomicsRNA antisnse puriification of Tau exon 10 pre-mRNA
In this study, we demonstrated the use of the RNA Antisense Purification by Mass Spectrometry (RAP-MS) method to identify proteins involved in specific alternative splicing events. Specifically, we applied the RAP-MS method to identify proteins that interact with the Tau pre-mRNA around its exon 10 ...
ORGANISM(S): Homo sapiens (Human) 
2022-02-16 | PXD023523 | Pride
Tau Splicing Human Rna antisense purification Rap-ms 
ProteomicsRAP-MS identification of proteins associated with XEF1 (CTR) mRNA and three variants of PROCA11, V1, V2 and V3
RAP-MS identification of proteins associated with XEF1 (CTR) mRNA and three variants of PROCA11, V1, V2 and V3.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2025-10-20 | MSV000099539 | MassIVE
TranscriptomicsLeft atrial tissue of rats exposed to rapid atrial pacing
Sustained atrial tachycardia leads to multiple molecular and cellular effects collectively defined as atrial tachycardia remodeling (ATR). ATR is thought to play a major role in the self-perpetuating nature of atrial fibrillation (AF) and has been a subject of intense research in large mammalian mod...
ORGANISM(S): Rattus norvegicus 
2019-08-01 | GSE126711 | GEO
ProteomicsIntegrator restraints paraspeckles assembly by promoting the 3’-end processing of the polyadenylated lncRNA NEAT1_1
Alternative 3’-end RNA processing provides an important source of transcriptome diversification, which impacts various biological processes and the etiology of diseases, including cancer. Here, we focused on a transcript isoform switch that leads to the readthrough expression of the long noncoding R...
ORGANISM(S): Homo sapiens (Human) 
2020-10-14 | PXD015158 | Pride
Cancer Neat1  alternative 3’-end rna processing Integrator Paraspeckles 
UnknownInfluence of Right Atrial Pressure on the Prognosis of Patients with Rheumatic Mitral Stenosis Undergoing Percutaneous Mitral Balloon Valvuloplasty.
Not available
S-EPMC11431111 | biostudies-literature
ProteomicsA KRAS-responsive long non-coding RNA controls microRNA
RNA Antisense Purification and Mass Spectrometry (RAP-MS) was performed to explore the potential RNA binding proteins of lncRNA KIMAT1
ORGANISM(S): Homo sapiens (Human) 
2021-03-01 | PXD024388 | Pride
H1299 Mass spectrometry Non-small cell lung cancer Rna-binding proteins Rna antisense purification Kimat1 
ProteomicsProteomic Analysis to Reveal the Role of Phosphoproteins in Rice Nucleus during Early Stage of Germination
Nucleus as the important subcellular organ of plant cell is responsible for storing most genetic information and controlling the plant's activities. Seed germination is an important stage for plant growth. To understand the role of nuclear protein and its phosphorylation during rice seed germination...
ORGANISM(S): Oryza sativa (Rice) 
2016-03-17 | PXD001774 | Pride
Germination phosphonetwork Rice Nucleus Phosphoproteomics 
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