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TranscriptomicsPlasmodesmal closure triggers stress responses
We generated two independent genetic tools that can induce callose deposition and plasmodesmal closure following estradiol treatment: LexA::Icals3m and LexA::PLUG. We harvested mature leaf tissue at 12h, 24h, 48h and 72h post induction and extracted total RNA
ORGANISM(S): Arabidopsis thaliana 
2026-03-31 | E-MTAB-16776 | biostudies-arrayexpress
TranscriptomicsRNA-sequencing of transgenic Arabidopsis seedlings constitutively expressing a Colletotrichum higginsianum effector
The fungal pathogen Colletotrichum higginsianum secretes effector proteins during infection of Arabidopsis. To explore the host processes perturbed by the effector candidate ChEC108 in host plants, transgenic Arabidopsis lines were generated to express AtUBQ10pro:ChEC108-eGFP or AtUBQ10pro:ChEC108^D...
ORGANISM(S): Arabidopsis thaliana 
2026-05-21 | E-MTAB-16996 | biostudies-arrayexpress
ProteomicsComparative phyloproteomics identifies conserved plasmodesmal proteins
Plasmodesmata are cytosolic bridges, lined by the plasma membrane and traversed by endoplasmic reticulum, connecting cells and tissues, and critical for many aspects of plant biology. While plasmodesmata are notoriously difficult to extract, tissue fractionation and proteomic analyses can yield valu...
ORGANISM(S): Physcomitrella patens subsp. patens (Moss) Arabidopsis thaliana (Mouse-ear cress) 
2023-01-13 | PXD038964 | Pride
Arabidopsis Plasmodesmata Phyloproteomics Physcomitrium 
GenomicsAssaying effector cell-to-cell mobility in plant tissues identifies hypermobility and indirect manipulation of plasmodesmata
Assaying effector cell-to-cell mobility in plant tissues identifies hypermobility and indirect manipulation of plasmodesmata
PRJNA1043684 | ENA
TranscriptomicsMacrophage response to lipopolysaccharide
Temporal analysis of bone marrow derived macrophages after 10 ug/ml lipopolysaccharide stimulation. C57BL6, C3H/ARC, BalbC and C3H/HeJ mouse strains analyzed. Each time point stimulated with 10ug/ml LPS from Salmonella minnesota for the time indicated. The RNA from each BMM stimulated time point was...
ORGANISM(S): Mus musculus 
2010-07-01 | E-GEOD-3148 | biostudies-arrayexpress
TranscriptomicsBMM_BalbC_LPS_timecourse
Bone marrow derived macrophages (BMM) total RNA from C3H/ARC mice extracted after stimulation by LPS at different time points. Each time point stimulated with 10ug/ml LPS from Salmonella minnesota for the time indicated. The RNA from each BMM stimulated time point was labeled with Cy3 and compared w...
ORGANISM(S): Mus musculus 
2003-03-27 | E-GEOD-325 | biostudies-arrayexpress
UnknownPlasmodesmal closure elicits stress responses
Not available
S-SCDT-10_1038-S44319-026-00789-2 | biostudies-other
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