Favre A A - OmicsDI

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Unknown (396)
Proteomics (21)
Transcriptomics (9)
Genomics (5)
Metabolomics (2)
Models (1)

Organisms

Homo sapiens (6)
Toxoplasma gondii GT1 (6)
Toxoplasma gondii (4)
Toxoplasma gondii RH (3)
Chlamydia trachomatis (2)
Mus musculus (2)
cellular organisms (2)
Saccharomyces cerevisiae (2)
Escherichia coli (1)
Eukaryota (1)
Plasmodium berghei (1)
Plasmodium berghei ANKA (1)
Toxoplasma gondii RH-88 (1)

Repository

pride (18)
biostudies-arrayexpress (9)
ENA (5)
jPOST (2)
MetaboLights (2)
BioModels (1)
PAXDB (1)

Tissue

Blood cell (1)
Cell culture (1)
Cell suspension culture (1)
Foreskin fibroblast (1)
Foreskin fibroblast cell line (1)
Skin fibroblast (1)

Disease

Toxoplasmosis (1)

Technology Type

Mass Spectrometry (18)
Shotgun proteomics (9)
Bottom-up proteomics (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Mass spectrometry (2)
Data-dependent acquisition (2)
Top-down proteomics (2)
Gel-based experiment (1)

Instrument Platform

NextSeq 550 (2)
Liquid Chromatography MS - negative - reverse phase (2)
Illumina NovaSeq 6000 (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2021 (5)
2026 (5)
2023 (4)
2022 (4)
2024 (3)
2010 (3)
2020 (2)
2015 (1)
2014 (1)
2012 (1)
2011 (1)
2019 (1)
2018 (1)
2017 (1)

UNIPROT ID/AC

5811.TGME49_004050 (1)
5811.TGME49_005250 (1)
5811.TGME49_027920 (1)
5811.TGME49_044150 (1)
5811.TGME49_054560 (1)
5811.TGME49_094800 (1)
5811.TGME49_102050 (1)
5811.TGME49_119870 (1)
5811.TGME49_119920 (1)
A0A0F7UMP6_TOXGV (1)
A0A0F7UN03_TOXGV (1)
A0A0F7UNS9_TOXGV (1)
A0A0F7UNU4_TOXGV (1)
A0A0F7URF8_TOXGV (1)
A0A0F7US18_TOXGV (1)
A0A0F7USK4_TOXGV (1)
A0A0F7USU7_TOXGV (1)
A0A0F7UTC9_TOXGV (1)
A0A0F7UTQ6_TOXGV (1)
A0A0F7UTS9_TOXGV (1)
A0A0F7UU04_TOXGV (1)
A0A0F7UU07_TOXGV (1)
A0A0F7UUM4_TOXGV (1)
A0A0F7UVN4_TOXGV (1)
A0A0F7UWM4_TOXGV (1)
A0A0F7UXU1_TOXGV (1)
A0A0F7UXX2_TOXGV (1)
A0A0F7UY31_TOXGV (1)
A0A0F7UYG5_TOXGV (1)
A0A0F7UZH2_TOXGV (1)

CHEBI ID

CHEBI:10049 (1)
CHEBI:10329 (1)
CHEBI:10360 (1)
CHEBI:10472 (1)
CHEBI:10723 (1)
CHEBI:10860 (1)
CHEBI:11561 (1)
CHEBI:11750 (1)
CHEBI:1184 (1)
CHEBI:11851 (1)
CHEBI:12266 (1)
CHEBI:1233 (1)
CHEBI:1235 (1)
CHEBI:13086 (1)
CHEBI:13705 (1)
CHEBI:1387 (1)
CHEBI:14086 (1)
CHEBI:1463 (1)
CHEBI:14737 (1)
CHEBI:15339 (1)
CHEBI:15343 (1)
CHEBI:15345 (1)
CHEBI:15346 (1)
CHEBI:15350 (1)
CHEBI:15351 (1)
CHEBI:15354 (1)
CHEBI:15366 (1)
CHEBI:15367 (1)
CHEBI:15372 (1)
CHEBI:15375 (1)

Metabolite Name

(+)-12-hydroxy-9Z-hexadecenoic acid (1)
(+)-15,16-Dihydroxyoctadecanoic acid (1)
(+)-2-Sterpurene-6-ol (1)
(+)-Bicyclohumulenone (1)
(+)-delta-Cuprenen-4alpha-ol (1)
(-)-Malyngolide (1)
(10S)-Juvenile hormone III acid diol (1)
(10S)-Juvenile hormone III diol (1)
(13R,14R)-8-Labdene-13,14,15-triol (1)
(1R,2R)-3-oxo-2-pentyl-cyclopentanehexanoic acid (1)
(1S,2S)-3-oxo-2-pentyl-cyclopentanebutanoic acid (1)
(1S,2S)-3-oxo-2-pentyl-cyclopentanehexanoic acid (1)
(1S,2S)-3-oxo-2-pentyl-cyclopentaneoctanoic acid (1)
(23S)-3alpha,7alpha,23-Trihydroxy-5beta-cholan-24-oic Acid (1)
(23S)-methylcholic acid (1)
(25S)-5alpha-cholestan-3beta,6alpha,7beta,8beta,15alpha,16beta,26-heptol (1)
(2R,3S)-Piscidic acid (1)
(2S,2'S)-Pyrosaccharopine (1)
(2S,4S)-Pinnatanine (1)
(3S,5S)-Carbapenam-3-carboxylic acid (1)
(3beta,5alpha,9alpha,14alpha,22E,24R)-3,5,9,14-Tetrahydroxyergosta-7,22-dien-6-one (1)
(3beta,5alpha,9alpha,22E,24R)-3,5,9-Trihydroxy-23-methylergosta-7,22-dien-6-one (1)
(3beta,9beta)-7-Drimene-3,11,12-triol (1)
(9S,10S)-10-hydroxy-9-(phosphonooxy)octadecanoate (1)
(9S,13S)-10,11-dihydro-12-oxo-15-phytoenoic acid (1)
(9xi,10xi,12xi)-9,10-Dihydroxy-12-octadecenoic acid (1)
(R)-3-hydroxybutyrylcarnitine (1)
(S)-14-Methylhexadecanoic acid (1)
(S)-5'-Deoxy-5'-(methylsulfinyl)adenosine (1)
(S)-Codamine (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

First Public Date

2023 (2)
2025 (1)
2024 (1)
2022 (1)

Study type

Transcription profiling by array (5)
Human - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of coding RNA (1)

Release Date

2022 (51)
2023 (41)
2021 (40)
2020 (37)
2018 (30)
2024 (27)
2017 (26)
2019 (23)
2025 (19)
2015 (17)
2016 (14)
2013 (13)
2014 (12)
2010 (9)
2012 (8)
2026 (8)
2011 (7)
2009 (6)
2008 (5)
2007 (4)
2006 (2)
2003 (2)
2005 (1)
2004 (1)
2001 (1)
1999 (1)

Lab affiliation

EDyP (2)
University of Geneva, Department of Microbiology and Molecular Medicine (2)
Departement of Biology University of Fribourg (1)
Department of Microbiology & Molecular Medicine, Medical University Center, University of Geneva, Geneva, Switzerland (1)
Department of Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, CH-1211 Geneva, Switzerland. (1)
Department of Microbiology and Molecular Medicine, University of Geneva, Geneva, Switzerland (1)
Department of Microbiology and Molecular Medicine, University of Geneva, Switzerland (1)
Dpt. of Microbiology and molecular medicine, Universtity of Geneva, Geneva, Switzerland (1)
European Molecular Biology Laboratory (1)
Institute of Parasitology, University of Zurich (1)
Institute of Parasitology, University of Zurich, Zurich, Switzerland (1)
Protein Maturation, Cell fate and Therapeutics Institute for Integrative Biology of the Cell (I2BC) CNRS UMR9198, Bt. 21, 1 Avenue de la Terrasse F-91198 Gif-sur-Yvette cedex, France (1)
Research and Diagnostic Institute of Pathology, Medical University of Graz, Stiftingtalstrasse 6, 8010 Graz, Austria; BioTechMed-Graz, Graz, Austria; Institute of Chemical Technologies and Analytics, Technische Universität Wien, Getreidemarkt 9/164, 1060 Vienna, Austria; (1)
University of Geneva, Department of Molecular Microbiology, Geneva, Switzerland (1)
Wellcome Trust Sanger Institute (1)
Whitehead Institute for Biomedical Research and Department of Biology, Massachusetts Institute of Biology, Cambridge, MA, USA (1)

Tags

xref:EuropePMC:PMC11306978 (2)

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Pantothenate biosynthesis is critical for chronic infection by the neurotropic parasite Toxoplasma gondii

Coenzyme A (CoA) is an essential molecule acting in metabolism, post-translational modification, and regulation of gene expression. While all organisms synthesize CoA, many, including humans, are unable to produce its precursor, pantothenate. Intriguingly, like most plants, fungi and bacteria, paras...

2022-03-21 | MTBLS2501 | MetaboLights

Multimodal treatment of Coats-like exudative vitreoretinopathy in Goldmann-Favre syndrome.

Not available

S-EPMC8859797 | biostudies-literature

A novel mutation in the NR2E3 gene associated with Goldmann-Favre syndrome and vasoproliferative tumor of the retina.

Not available

S-EPMC4039415 | biostudies-literature

Immunoprecipitation of MyoL-Ty second copy

Toxoplasma gondii possesses an apical complex important for its life cycle. One of the components of the apical complex are three preconoidal rings (PCRs), important for gliding motility of the parasite. MyoL is an atypical myosin located at the PCRs, the depletion of which causes a partial detachme...

ORGANISM(S): Toxoplasma gondii GT1

2026-09-29 | PXD083501 | Pride