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MetabolomicsFDR-controlled metabolite annotation for high-resolution imaging mass spectrometry imaging MS (LC-MS assay)
High-mass-resolution imaging mass spectrometry promises to localize hundreds of metabolites directly from tissues, cell cultures, and agar plates with cellular resolution, but is hampered by the lack of bioinformatics for automated metabolite identification. We developed the first bioinformatics fra...
2016-12-05 | MTBLS378 | MetaboLights
MetabolomicsFDR-controlled metabolite annotation for high-resolution imaging mass spectrometry imaging MS (MALDI imaging assay)
High-mass-resolution imaging mass spectrometry promises to localize hundreds of metabolites directly from tissues, cell cultures, and agar plates with cellular resolution, but is hampered by the lack of bioinformatics for automated metabolite identification. We developed the first bioinformatics fra...
2017-04-10 | MTBLS313 | MetaboLights
MetabolomicsFDR-controlled metabolite annotation for high-resolution imaging mass spectrometry - simulated Imaging MS (Imaging simulation assay)
High-mass-resolution imaging mass spectrometry promises to localize hundreds of metabolites directly from tissues, cell cultures, and agar plates with cellular resolution, but is hampered by the lack of bioinformatics for automated metabolite identification. We developed the first bioinformatics fra...
2016-12-05 | MTBLS317 | MetaboLights
Proteomicsimmunoprecipitation-mass spectrometry (IP-MS) of FDR-1
immunoprecipitation-mass spectrometry (IP-MS)of FDR-1
ORGANISM(S): Caenorhabditis elegans 
2025-08-07 | PXD066847 | Pride
Fdr-1 ip-ms 
GenomicsSingle cell analysis of senescent cells of old p16-FDR mice (kidney)
Single cell analysis of senescent cells of old p16-FDR mice (kidney)
PRJNA683860 | ENA
GenomicsSingle cell analysis of senescent cells of old p16-FDR mice (lung)
Single cell analysis of senescent cells of old p16-FDR mice (lung)
PRJNA683865 | ENA
GenomicsSingle cell analysis of senescent cells of old p16-FDR mice (heart)
Single cell analysis of senescent cells of old p16-FDR mice (heart)
PRJNA683861 | ENA
UnknownGlobal FDR control across multiple RNAseq experiments.
Not available
S-EPMC9805573 | biostudies-literature
ProteomicsImproved detection of differentially abundant proteins through FDR-control of peptide-identity-propagation
We present a method for FDR control of PIP, called “PIP-ECHO” (PIP Error Control via Hybrid cOmpetition) and devise a rigorous protocol for evaluating FDR control of any PIP method. Using three different datasets, we evaluate PIP-ECHO alongside the PIP procedures implemented by FlashLFQ, IonQuant, a...
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2025-10-06 | PXD057758 | Pride
Mbr E. coli Human Lfq Quantification Pip 
ProteomicsContext Dependent FDR
These are the files that accompany the Context Dependent FDR manuscript. A training set with known correct answers was created from two recently published manuscripts. This allows the magnitude of the loss of control on FDR to be observed. The training dataset contains mzML files where each file con...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2018-05-16 | MSV000082367 | MassIVE
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